Gene CHU_1053 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_1053 
SymbolphrB 
ID4185011 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp1218702 
End bp1220006 
Gene Length1305 bp 
Protein Length434 aa 
Translation table11 
GC content42% 
IMG OID638071052 
Productdeoxyribodipyrimidine photo-lyase type I 
Protein accessionYP_677670 
Protein GI110637463 
COG category[L] Replication, recombination and repair 
COG ID[COG0415] Deoxyribodipyrimidine photolyase 
TIGRFAM ID[TIGR02765] cryptochrome, DASH family 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.632798 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGCT CTATTGTTTG GTTCAAAACA GACCTCCGGC TGCACGATAA CGAAACCCTT 
GTTCGCGCGA TAGAACAAAG CGACGAGATT ATTCCGGTTT ACTGCCTTGA TGAGGATCAC
TTTAAAATAA CGCCGTTCGG TTTTCAGAAA ACAGGAAATT TCAGAGCGCA GTTTTTATTA
GAGTCATTGA ATGACCTGGA TACGAACCTG CGTAAACTTG GCTCAGGACT GATTGTTGTG
AGAGGCAAAC CGGAAACGGA GCTTTATAAA ATCGTAAAAC AATATGAAGC CTTCAAGGTT
TTTGCCAAGC GCGAAGTAGC TTACGAAGAA CAACAAACGG AAGCACGTGT AGAAAAAGAA
ATATGGAAGC TTGGCTGCAC ATTTGAAAGC TTTAGTACAA GTACGTTGTA CCATGCGCAG
GATCTGCCGT TTTCTATAAA AGATATTCCG GAAGTATTCA CCAATTTCAG GAAGAAAGTA
GAAAAAGAAT CTTCTATCCG CTCGGTTTTC CAAAAACCTG CTCACATAAA ATCTCCGGCA
ATGCCGCAGC TGCGCCTGCC CACGGTAAAG GGCTTAGGAC TACAGCCAGT TATACAGGAC
CCGAGAGCCG TAATGAAATT TACGGGAGGC GAAAGCGAAG GCTGCAAACG ATTGACAAGC
TACCTTTTTG AAACGCAGCT AATCTCACAT TATAAGAACA CAAGAGATGG AATGATTGGC
AGCGACTATT CTACTAAATT TTCTCCCTGG CTGGCTTTGG GATGTTTGTC ACCGAGAGAA
ATTTATACTG AATTAAAAAA ATACGAATCC CGGTTCTCCG CTAATGAATC TACATACTGG
TTGATATTCG AATTACTCTG GCGCGATTAC TTTCGCTTTA TGATGAAAAA GCACAAACAT
CAGTTCTTTT TATATTCAGG TATTAAAGAT TCAGCTAACG CATCCGGCCT GCAGGATACA
GCAATACTCT CTCAGTGGAT CAATGGCAAA ACGGGCAATG ATTTTATAGA CGCCAACATG
CTGGAGCTAA CACATACAGG CTTTATGAGT AACAGAGGCA GACAAAATGC AGCGAGCTAT
TTATGCAATG ATCTTGGCAT AGATTGGCGC TACGGTGCTG CATATTTTGA ACAGCAGCTT
ATAGATTACG ATGTGTGCAG CAATTGGGGT AACTGGGCTT ATCTGGCAGG TGTAGGAAAC
GATCCAAGAG GAAAGCGGAA TTTCAATATT GAAAAACAGG CGGAGGAATA TGATCCTAAA
AAATTATTCC GGAATCTGTG GCTGAAGACC ACCCTGCCTT TATAA
 
Protein sequence
MKRSIVWFKT DLRLHDNETL VRAIEQSDEI IPVYCLDEDH FKITPFGFQK TGNFRAQFLL 
ESLNDLDTNL RKLGSGLIVV RGKPETELYK IVKQYEAFKV FAKREVAYEE QQTEARVEKE
IWKLGCTFES FSTSTLYHAQ DLPFSIKDIP EVFTNFRKKV EKESSIRSVF QKPAHIKSPA
MPQLRLPTVK GLGLQPVIQD PRAVMKFTGG ESEGCKRLTS YLFETQLISH YKNTRDGMIG
SDYSTKFSPW LALGCLSPRE IYTELKKYES RFSANESTYW LIFELLWRDY FRFMMKKHKH
QFFLYSGIKD SANASGLQDT AILSQWINGK TGNDFIDANM LELTHTGFMS NRGRQNAASY
LCNDLGIDWR YGAAYFEQQL IDYDVCSNWG NWAYLAGVGN DPRGKRNFNI EKQAEEYDPK
KLFRNLWLKT TLPL