| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CA2559_05090 |
|---|
| Symbol | |
|---|
| ID | 9296510 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Croceibacter atlanticus HTCC2559 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014230 |
|---|
| Strand | + |
|---|
| Start bp | 1153941 |
|---|
| End bp | 1155770 |
|---|
| Gene Length | 1830 bp |
|---|
| Protein Length | 609 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | |
|---|
| Product | putative alpha-amylase |
|---|
| Protein accession | YP_003715782 |
|---|
| Protein GI | 298207603 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACAA CGTTTGCACA GTTAGAAAGG TTGGAGCCAC CAAATTGGTG GGCAGATATG
AATTTAACAT CAGTCCAACT GTTATGTTAT GGTGAAAACA TTTCAGATTA TGAGGTGTCC
TCTAAAGACA TAACTATTGT AAATGTGGAG CGTACAGAAA ACCCTAATTA TCTGTTTGTT
AATGTAAATT TTGAAGGGCT TTCTGCTGGA GAATATTCAT TTAAGTTCAA AAAGAAAGGT
TCAAAATCTT TCACTAAGGC TTTTGCCTTA AAAGAACGTG ATGCAAACTC AAAAGAAAGA
GAAAGCTTTA ATTCAAGTGA TTTGGTGTAT TTAATAATGC CAGATCGTTT TGCCAATGGA
GATACAAGTA ATGACAGTAT GCCAAGTGTT ACAGAAAAAG TAAACAGAGC AGAACAAGGT
GGCCGTCACG GTGGCGATTT ACAAGGTGTA ATTAATCAAT TAGATTATTT AGAAGATCTT
GGAGTTACTG CACTTTGGAG CACACCACTT TTAGAAGATA ACGACGCAAA ATATTCTTAT
CACACCTATG CACAAAGCGA TGTATATAAG ATAGATCCAC GTTATGGAAC CAATGAGGAT
TATAAGCGCT TGGCAACCGA GATGGAACAA CGCGATATGA AATTAATAAT GGATTATGTG
ACCAATCATT GGGGTGCAGA ACATTGGTTA ATTAAAGATT TACCAGAACA AAGCTGGATT
CATCAATTTG AAGACAATAA AGGCAAAGAT TTTCCTTTAG ATGGCTATGC CAACTCAAAC
TACAGGATGA CAACACAGTA CGATCCAAAC GCGTCTGCAA TAGATATACG TTACTGTGAA
GATGGTTGGT TTACGAGTAC AATGCCAGAT TTAAACCAAA GCAATCCTAA AACGTTAACC
TATTTAATAC AAAATGCCAT TTGGTGGATA GAGTATTCTG GGTTAGATGG TTTTCGCGTA
GATACCTATT CATATAATGA TAAAGAAGGC ATCGCAAATT GGACAAAAGC TATTACAGAT
GAATATCCTA ACTTTAATAT TGTAGGAGAA GTTTGGCTAC ATAATCAAGC CCAAATAGCA
TATTGGCAAA AAGACAGCAA AATAGGAGCC TTGCAAAATT TTAATTCTCA TTGTCCAAGT
GTCATGGATT TTACACTTCA TGATGCAATT GGTGTAATGT TTAAAGAAGA CAACGCCAGC
TGGAATGACG GAATGATTAA AGCGTACGAT AATTTTGTGA ATGACTTTTT ATACCAAGAC
ATAGACAATC TTATGGTTTT TGCAGAAAAC CATGATACCG GACGTATAAA CGAAATTTAC
AATGGGAGCC TAGACCATTA TAAACTAGCA ATGACGTTAG TGGCTACCAC AAGAGGAACA
CCTCAAATTT ATTACGGTAG TGAAATAGGA ATGCGTGGCG ACAAAGGAAA AGGAGATGGT
GCTATACGAC AAGATTTTCC TGGTGGTTGG GCTACAGATG CTAACAACGC CTTTACAAAA
GATGGCCGTA CAGAAGAGCA AGAGGCATAT CATTCATTCT CTAAAACACT TTTCAATTTC
AGAAAAGAAA CACCAGCGTT ACATACAGGA GAGTTATTGC ATTACCTTCC AGAAAATAAC
GTCTATGTAT ATTTCAGAAG TTTAGAAGAT CAAACTGTAA TGGTTGTATT AAATAATAAT
CCAGAAGAAC AGACTTTAGA TTTAAGTCGT TTTACTGAAG GTATTAAGAA TGCTACAACA
GGTAAGGAGT TATTTTCTCA AAACACACTA AATTTAGATG ATCCCTTAAC GGTTAAGGGA
AAATCTCCAT TAGTAATAAG CTTAAACTAA
|
|---|
| Protein sequence | MQTTFAQLER LEPPNWWADM NLTSVQLLCY GENISDYEVS SKDITIVNVE RTENPNYLFV
NVNFEGLSAG EYSFKFKKKG SKSFTKAFAL KERDANSKER ESFNSSDLVY LIMPDRFANG
DTSNDSMPSV TEKVNRAEQG GRHGGDLQGV INQLDYLEDL GVTALWSTPL LEDNDAKYSY
HTYAQSDVYK IDPRYGTNED YKRLATEMEQ RDMKLIMDYV TNHWGAEHWL IKDLPEQSWI
HQFEDNKGKD FPLDGYANSN YRMTTQYDPN ASAIDIRYCE DGWFTSTMPD LNQSNPKTLT
YLIQNAIWWI EYSGLDGFRV DTYSYNDKEG IANWTKAITD EYPNFNIVGE VWLHNQAQIA
YWQKDSKIGA LQNFNSHCPS VMDFTLHDAI GVMFKEDNAS WNDGMIKAYD NFVNDFLYQD
IDNLMVFAEN HDTGRINEIY NGSLDHYKLA MTLVATTRGT PQIYYGSEIG MRGDKGKGDG
AIRQDFPGGW ATDANNAFTK DGRTEEQEAY HSFSKTLFNF RKETPALHTG ELLHYLPENN
VYVYFRSLED QTVMVVLNNN PEEQTLDLSR FTEGIKNATT GKELFSQNTL NLDDPLTVKG
KSPLVISLN
|
|---|
| |