Gene CA2559_01000 details

Gene Information

• Locus tag: CA2559_01000
• ID: 9295682
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Croceibacter atlanticus HTCC2559
• Kingdom: Bacteria
• Replicon accession: NC_014230
• Strand: -
• Start bp: 235138
• End bp: 237093
• Gene Length: 1956 bp
• Protein Length: 651 aa
• Translation table: 11
• GC content: 33%
• Product: LysM-repeat domain protein
• Protein accession: YP_003714968
• Protein GI: 298206789

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAACAA TCCTAGCCAG TCTAATCTTC TTTTTAGCAT TCAATTTACA AACGAATGCA 
CAAGAATTTT TGACATATAC AGTTAATCAA GACGATACTG CCACTAGTTT GGCTAAGCGT 
TTTAATACTA CAATTCAAGA AATATATAGG TTTAATCCAG ATGCTAAAAA TGGATTGAGA 
AAAGGTGCTG TTTTAGTGAT CCCTAAAAGC ACTTCTGCTC AAAACAATAC GGCAAACTCG 
CAAGACCGCA CGCCAAAAAC CTTTAAAACA CATAAAGTAA AGCGTAAGGA AACCTTATAC 
AGTTTATCTA AAGAGTATAA TGTTACTGTA GATGAGATTA AGAGGTACAA TAAATGGTTG 
TATGCCGAGC AATTAAAACG AAAGGACAAA ATAAGAATAC CTGTGTATCC AAATGTTGTT 
ATTTCAGATA CTCAAACTGT TGATGATCCT AGGTTTATAA TTAAAGAAGA ACCTGTTGTT 
AAAATTGTAA GAACACCTTC TGGGAAAACA ACCCACACCG TTCAAGCTAA AGAAGGGAAA 
TACGGGATCT CTAGAAAATA TGGGATGACC ATAGCCGAGT TAGAAGCTAT GAATCCTGAT 
ATGGAAGAAC CTATACAACC AGGACAAGTA TTAAATGTAA AAGGCGAAGC TTCTACCGAA 
AGCACTGTAA TTACAGATGA ACGATTTACA TTTTATGAAG TTAAACCGAA AGAGAACTTC 
TTTAGGTTAG AGCAGCGTTT CAATATTTCT GAAGACTCAT TAATTGCACT AAATCCTAAA 
TTAGAAGAAG GACTAAAAGT AGGAATGATT ATAAAAATTC CTAAGAAGAA TACTAGTATT 
GCATTTGGTA ATGATGAGCT TGTTAACCTA GAAGCGTCTA TTAGAAACTA CGATGCTAAA 
ACTGTAGCAT TATTATTACC ATTTAATAGT CATAAGATTA CAAACGATTC GCTTTCAAAT 
ACAGAAGAGC GCATTAAGAG AGATCGTGTT ATGCGTATTT CATTAGATTT TTATAGTGGT 
GCCTTGGTTG CATTGGAAGA AGGAAAACAA AAAGGGTTGA GTACGACCCT AAGAGTTTTT 
GATACAGAAC AAAGCACATC TAAAGTAAGA GCTATTATAA ATGATAATAA CTTTAATGAT 
GTAGATGTAG TTGTAGGACC GCTTTTAAAT AGTACGGTTG AGGAAGCTTC TGCATTACTT 
AACAGAAAAG ACATTCCGGT AATTTCACCA TTGTCGAGTA GAAAAGCTAA CGGAAGAGAA 
AACCTTATAC AGTCTCGCCC TACAGATGAT ATGTTACACG AGGTTATGCT TAGTTATCTT 
GAAGCTATGC ATACAGACCA AAACATAGTT ATTTTGGCAG ATGATAATGC ATCATCTATT 
AAATCTCTTA TAACATCTAA ATTTCCAACT GCTTCAACTT TAAAAAAGCA AGAAGACAAT 
TTTGTGTATC AAAATGATGT AAGCAAGCAA TTGGTAAGTG GAAAAGACAA TTGGTTTATT 
GTAGCTACAG AAGATGTAGC ATTATTAAGT AATCTTTTAT CGTATTTAAA CGCTTACCGT 
TCTAAACATA ACATACAACT ATTTGCTTTG GAGAAAACAT CTGCGTTTGA TAGTGAAGAT 
GTTTCAAACG ATCATTTAAG TAATCTTAAA TTTACTTTTC CTTCAGTAGA TAAAGAATTT 
GATTATGAGA ATAAAGCCAA ATTCATAATA GATTATAATG CTAAATACGG TATTGCTCCT 
AATAAATATG CAGTGCGTGG TTATGATATT ATGTATGATA CGTTGTTGAG GTTGGCAAAT 
TCAGACACTT ACATGGAATC GTTAGAAAAT AATATAGCTA CAGAGTACAT TGAAAACAAA 
TTTAGTTATG TTGAAAACGG TATAAGTGGC TATATGAATA ACGGGATCTA TATTATGCAA 
TATGGAGAAA ACCTTACCCT AAAACCTGTA GAATAA 

 

Protein sequence

MKTILASLIF FLAFNLQTNA QEFLTYTVNQ DDTATSLAKR FNTTIQEIYR FNPDAKNGLR 
KGAVLVIPKS TSAQNNTANS QDRTPKTFKT HKVKRKETLY SLSKEYNVTV DEIKRYNKWL 
YAEQLKRKDK IRIPVYPNVV ISDTQTVDDP RFIIKEEPVV KIVRTPSGKT THTVQAKEGK 
YGISRKYGMT IAELEAMNPD MEEPIQPGQV LNVKGEASTE STVITDERFT FYEVKPKENF 
FRLEQRFNIS EDSLIALNPK LEEGLKVGMI IKIPKKNTSI AFGNDELVNL EASIRNYDAK 
TVALLLPFNS HKITNDSLSN TEERIKRDRV MRISLDFYSG ALVALEEGKQ KGLSTTLRVF 
DTEQSTSKVR AIINDNNFND VDVVVGPLLN STVEEASALL NRKDIPVISP LSSRKANGRE 
NLIQSRPTDD MLHEVMLSYL EAMHTDQNIV ILADDNASSI KSLITSKFPT ASTLKKQEDN 
FVYQNDVSKQ LVSGKDNWFI VATEDVALLS NLLSYLNAYR SKHNIQLFAL EKTSAFDSED 
VSNDHLSNLK FTFPSVDKEF DYENKAKFII DYNAKYGIAP NKYAVRGYDI MYDTLLRLAN 
SDTYMESLEN NIATEYIENK FSYVENGISG YMNNGIYIMQ YGENLTLKPV E