| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3931 |
|---|
| Symbol | |
|---|
| ID | 4013415 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 4121566 |
|---|
| End bp | 4122393 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637943580 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_550723 |
|---|
| Protein GI | 91789771 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.464883 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.199472 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTCA AAGGCAAGAC CCTCTTCATC ACCGGTGCCT CGCGCGGCAT CGGGCTGGCC
ATCGGCAACC GGGCCGCCGC CGACGGCGCC AATGTGGTCA TCGTGGCCAA GACCACCGAT
GCCAACCCCA AGCTGCCCGG CACCATCTAC AGCGCCGCCG AAGAAATCCG GGCCTCTGGC
GGCCAGGCGC TGGCGCTGGC TGTGGACATC CGCGACGAAG ACGCCGTGAG AGTCGCCGTG
GTCAAGGCCG TGGAGACTTT TGGCGGCATC GACATCCTGG TCAACAACGC CAGCGCCATC
AGCCTCACCG ACACCGAGCA CACGCCGATG AAGCGCTACG ACCTGATGAA CGGCGTCAAT
GCGCGCGGCA CCTACCTGTG CACGCAGGCC TGCCTGGCCG AGCTGAAAAA ATCCGCGCAG
GCCGGGCGCA ACCCGCATGT GCTGACGATG TCGCCGCCGC TGTCGATGAA GCCGCACTGG
TTTGAGCACC ACACGGCCTA CACCATGGCC AAGTACGGCA TGAGCATGTG CACGCTGGGG
CATGCGGGCG AGTTCGGGAA GTACGGCATC GCCGTCAACA GCCTGTGGCC GCGCACCGCC
ATTGCCACCG CCGCGCTGCA GATGCTGCCC GGGGTGGACG TGAAGCGCTG CCGAACGCCC
GAGATCCTGT CTGACGCTGC CTACCTGATC CTGACCAGCC CGAGTTCGAA CACCGGCAAT
TTTTATATTG ACGACGAACT GCTGGCCGCA CACGGCATCA CCGACCTGGA AAAATATTCG
GTGACCCCGG GAACGAAAGA CTTCATTCCG GATTTCTTCG TGGATTGA
|
|---|
| Protein sequence | MNLKGKTLFI TGASRGIGLA IGNRAAADGA NVVIVAKTTD ANPKLPGTIY SAAEEIRASG
GQALALAVDI RDEDAVRVAV VKAVETFGGI DILVNNASAI SLTDTEHTPM KRYDLMNGVN
ARGTYLCTQA CLAELKKSAQ AGRNPHVLTM SPPLSMKPHW FEHHTAYTMA KYGMSMCTLG
HAGEFGKYGI AVNSLWPRTA IATAALQMLP GVDVKRCRTP EILSDAAYLI LTSPSSNTGN
FYIDDELLAA HGITDLEKYS VTPGTKDFIP DFFVD
|
|---|
| |