| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0641 |
|---|
| Symbol | |
|---|
| ID | 6282115 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 699193 |
|---|
| End bp | 700674 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642620206 |
|---|
| Product | N-acyl-D-amino-acid deacylase |
|---|
| Protein accession | YP_001894290 |
|---|
| Protein GI | 187922648 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3653] N-acyl-D-aspartate/D-glutamate deacylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.388826 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACTCGC ATCCCGAAGC CGCTGATACG CTGATCGTCG GCGCGCAACT GTATGACGGC
ACGGGCGCGC CGCCTGTCGA ACGCGATGTC GCGGTTCGCG ACGGCCGCAT CGTCGCGATC
GGCAATCTGT CGAACTGGCT CGCCGAAGAA GTGATCGAGG CCGAAGGCCG CGCGTTGGCG
CCGGGTTTCA TCGACGTTCA CACGCACGAC GACACGCACG TGATCCGCTC GCCGCAAATG
TTGCCGAAGA TCACGCAAGG CGTGACGACG GTGATCGTAG GCAATTGCGG CATCAGCGCG
TCGCCGGTTG CACTCAAAGG CGACCCGCCT GATCCGATGA ATCTGCTCGG CGAGCGCGAC
GCATTCCAGT ATCCGACCTT TGCCGCGTAT GTCAAAGCGG TGAACGCGGC GCGGCCGGCG
GTGAATGTCG GCGCGCTGAT CGGCCATACG GCGTTGCGCA GCAACCAGAT GGACCGGCTC
GACCGCGCGG CGACCCCGCA GGAAATCGAC GGCATGCGCG CCCAGCTCGA AGAAGCGTTG
GCCAACGGCG CGTTGGGTCT GAGCTCCGGT CTCGCATACG GCTCGGCCTT CTCGGCGCCG
ACCGAAGAGG TGATGGCGTT GGCCGAACCA CTTGCCGCAG CCGGCGCGTT GTACACCACG
CACATGCGCA CCGAATTCGA CGCAATTCTC GACGCGATGG ACGAGGCGTA TCGCGTGGGC
CGTCACGCGC ACGTGCCGGT GGTGATTTCG CATCTGAAGT GCGCGGGTCC GTCGAACTGG
GGACGCAGCG AAGAAGTGCT GAAGTCGCTC GAAGGCGCGA GCCGCCTGCA GCCGATCGGT
TGCGATTGCT ATCCGTACAA CCGCAGTTCG TCGACGCTCG ATGTGAAACA GGTGACGGGC
GATATCGACA TCACGATTAC GTGGTCGGAG CCGCATCCGG AGATGGCGGG CAAGCTCGTG
AAACAGATTG CGGCGGAGTG GGGCGTCTCG CAGCAGGAAG CCGGCAAGCG CCTGCAACCG
GCGGGCGCGG TGTATCACAA CATGTCCGAA GACGACGTGC GGCGCATTCT TTCGCATCCC
GCGACCATGG TCGGCTCGGA TGGTTTGCCG AACGATCCGC TGCCGCATCC GCGCTTGTGG
GGCGCGTTTC CGCGCGTGCT TGGCCACTAT GCGCGCGACG CGGGCTTGCT GCCGCTCGAA
GAAGCGGTGC GCAAGATGAC CGGTTTGTCG GCGCGTCGCT ATGGACTCAC GCAGCGCGGC
GAGGTGCATA TCGGTTACCA CGCCGATCTG GTTTTATTCG ACCCGGCCAA GGTGCGCGAC
GTGGCGACGT TCGAGAACCC GCAACAGGCC GCCGACGGCA TCGACGCGGT GTGGGTGAAC
GGCGTGTTGA CGTATCGCGA TGGTGAAGTG ACAGGCGAAC GCGCGGGTCA CTTCGTGGCG
CGCGGCGCGG CGTCGAAAGG CGATGCGCAC GGCGCGTTCT GA
|
|---|
| Protein sequence | MHSHPEAADT LIVGAQLYDG TGAPPVERDV AVRDGRIVAI GNLSNWLAEE VIEAEGRALA
PGFIDVHTHD DTHVIRSPQM LPKITQGVTT VIVGNCGISA SPVALKGDPP DPMNLLGERD
AFQYPTFAAY VKAVNAARPA VNVGALIGHT ALRSNQMDRL DRAATPQEID GMRAQLEEAL
ANGALGLSSG LAYGSAFSAP TEEVMALAEP LAAAGALYTT HMRTEFDAIL DAMDEAYRVG
RHAHVPVVIS HLKCAGPSNW GRSEEVLKSL EGASRLQPIG CDCYPYNRSS STLDVKQVTG
DIDITITWSE PHPEMAGKLV KQIAAEWGVS QQEAGKRLQP AGAVYHNMSE DDVRRILSHP
ATMVGSDGLP NDPLPHPRLW GAFPRVLGHY ARDAGLLPLE EAVRKMTGLS ARRYGLTQRG
EVHIGYHADL VLFDPAKVRD VATFENPQQA ADGIDAVWVN GVLTYRDGEV TGERAGHFVA
RGAASKGDAH GAF
|
|---|
| |