| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_5289 |
|---|
| Symbol | |
|---|
| ID | 6246774 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010623 |
|---|
| Strand | - |
|---|
| Start bp | 2421072 |
|---|
| End bp | 2424992 |
|---|
| Gene Length | 3921 bp |
|---|
| Protein Length | 1306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642597010 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001861413 |
|---|
| Protein GI | 186474071 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0796191 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.247502 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGACGT CGCCTGCGAC ACCTGACCGC GAGCGGCTCT TCTCGCCCGC TGTGCTTCTC
GTGCTCGGCC TGCTGGTCGG CGTGATGCTC GCGCTCGCCT TTCCGCGCGA GAAGATCGAA
TCGCGGCTGC TCGCGGGCGC GAAGGTGGAC AGCCTCACGA TCGCTTATCT GGAAGCGTGG
CTGCGCGTCG ATCCGAACAA TGCCGACGTG CTGTCCGAAT TGACGCGCGA ATACCTGACG
GGCCAGCGCA TTTCAGATGC AACGCACGTT CTCGAGCGGC TATCGCACTC CAGCGACGCG
AACGCGCGGC AACGCGCACT GGCAATTCGC GTGTCGATTG CACAGCAGCG GCTCTATGCG
CTCAAATCGA ATGATCCGAC GCGCCCTGCC CGCATTCGCG AGCTCGATGC GCTGCTGCAC
GAAGCGCTCG ACTACCAATG GGACAACGAG CAACTCAACA TGCTCGCGCA GCAGGCTCGC
GGACTGAGCG ACAACGATCT CGCCGCGCGC TATTACACAG TGCTTGCGAA ATCCGACCCG
GAGCACGCAC GCGAATGGCT CGCTGCGCTC GCGCAAACGC AACTCGGCAA TCAGCAGCAT
CGCGCAGCCG CCGACGCATG GTTCGCCGCC CAGGCGCAAG CGACCTCGCG CGACGAGGAG
CGAGCCGCTT TCATCGCCGG TCTGAAGGCG CTGCAATCGG GCAACGATAT GGCGGCGACA
ATGCAGGCGG CCGACCAGCA TATCGGCGAT CTGGCGGACG ATCCCGATAC CTTACGTTTT
CTCGCAAACC TCGCGCTGGC GGCGGGCCGT CCCGATCTCG CGGCGAAGTA CGTGAAGCGG
TTGATGAAAA TGTCCGGGCT GGAGCGCGAG CGGGCACTGT CACAAGCCGC ATCGTACGAG
CCCAGGCGTA CTCGCGAGCC GGCGCTCAGC GAGCATCGCG CCACGCATCG TGTATGGCTG
CATGCTGCGT GGTATCGGCC CCATTCTTCA CGCGCTGCGG CATTGCGCCG TGCGCTCAGC
AAGGGTTCGG AGGAAGACAC GCAGGGTGCG CACCTCGTAC GCATCGCTGC AGCAGAACCG
CCCGCTCCCG CAAGCGACGC CACCGCCGCC GACTACGAAC TCGCATATCG CGTGTTCCTT
GCGAACGGCG ATGTGGCGAA TGCGCAGCGC ATTGCGCAAT CGGCGGTGGA CCGCGATCCG
CTATCGATCG GGTGGCGCGA ACGTCTCGCC CAGGTCGCCG AATGGAATCG CCGTCAGGAC
ATTGCGCTCG CCAACTATGT CGCGATCGCA AAGATGCGCG GCACCGACGA CGACTGGAAA
AAAGTCGCGC GTCTGGCGCC CGGCCTCAAC GACAACGCGG CGATGCTCGC TGTCATGCTG
CACCAGGCCG ATCGGCAGCC GGGCAATGTG AAGCTGCTCG ATGCCGTCGT GTTCTCGTAC
GAACGCGTCG CCGACCCCGA CTCGGCGCTG CGCTTCCTGC AGTCGCGCTT CAAAGGCGCG
TTGCGCCGCG AAGCGATGGA ACGTTACGCG CAGGTCGCCG AGAGCAAGGG CGACGACGAG
CTCGCGCTGC GCACGTGGCG CGAGCTGGAG CGCAGCTACG GCCCCAACGC CGCGTATGGA
TTGAAAATCG GCACGATGCT CTACACGCGC ACGCAGTTCG ACGCGGCGCT CGCCGCGATG
AACGAAGCAA AGCGCGCGGC GCCCGCATCG AACAACGATT TCTGGCGCTT CTATGCGCTG
CTCGCCGATT CCAACCAGAG CGAGCACGAT GCGCGCCTCG GCTATCGGCA GCTGATCGCG
GGTGGCAAGG CCGACCCGCA AGACTACGAG GTGATGACGA ACTTCTTCCA CGATTCGCCG
CTCGACGCGG GCCGCCTTGC CGAATACGCG TATCGTCACG GCGGCTCGAC GCGGATGCTG
TCGGAAGCGT TGTACGGCTA TCAGCGCGCG CATGCGTGGG GGCGCATCGG CACGCTGCTG
GCGTCGCTCA CGCCGGAGCA GTTGCAGGCC GCCGAACAAT CGCCGGCGTT CCTGCTCGCG
CGCGCGGAAT ACGAACGGCA GGCGGGCGAG AACGATGCGG CGCTGCACGA CATCGAACGC
GCGGTCACGC TCGATCCGAA CAATTCGGAA GCGCGCGCCG CCCACATCTG GGTATTGAAT
GAGCGCGGCA CGGACGCCGC CCTGCTCGCC GCGCTGCGCC GCCATGCGGA CGATGCCGAA
ACCGATCCGC CACTCTGGCC CGCGTATGCC GCGGCGTGGC TGCGCATCGG CGATGGACGC
AAAGCGCTGC ACTATCTGCA CAAGCAAGCG GCGCAAGCAA AGCAAGGTCC GCTGTGGCGC
CTCACGTTCG CGGACGCACT GGAACTGAAT GGCCGCGCCG ATGAAGCCTG GCGCGTGCGC
AAGCAGGCGT GGATGGAACT GGCGCGGCGC CGGCGTGATC CATCCAGTGC TACGCAGCTG
TCCGCCGCCG AACAGGACGA GCTGCGCGGC CGTTACACCG CGCTCACGCA ACTTTATGCC
GACGGCGACC GCTCGCGCGC CGTGCTGATC GACATGCTGC GCGCGGATCG CAACGCCACG
GGCAGCGACG ATCCGGCCGG GTCGGAACTC GGCGACATCG GCCAGTTGCC GCCCGCGAAG
CAGGACGACA TTCGCAAGCG CCAGCGGCTC TATTCGTCGA TCGCGCGCGA AGCGGCAATT
TCGTGGGCCC AAAACGAAGA CGCGTCCGAC ATGGAGCGCG CATGGCTAGA GAAACAGTAC
ATCGACGATA GCCAGCGTCC CGTCTACGCC GAGGCGCAAC TCGCCATCAA CGACGGCGAT
GTCAACGAAC TCGCGCGCCT GCTCGATACG CTGCCCGATC TGGTGCCGAG GCAAAGCCGC
GTCGATGCGC AGGCGCTCAC GGGGCGCACG TCGGCTGCAC AAACGAGCGC GTTCGAATCG
CTCACGCGCG AGCCCGACGA CGAGGTGATG CAGGCGTTGG CGCGCGAGCA GTTGCTCAGC
AACGCACAGG CGCTGGCAGG CGCGTTCCGT TACGTCGATC AGGGCTCGCT GCGCTTCACC
GAGGAATCAG CGACGGGCAG CGTGCGCCTC ACGCCTTCGC AGAACCTGCA GTTCCGCTAT
CAGCAGCGCG ATCAGACTGT GGACGGTTCG CAGCTCGCGT ATGCGCCGAA ACACGACCGG
CTGGCCGAAG CGATCTACGG CCACAAGGGG CCATACGACG AACAGCGCGT CACGCTCGGC
CGCCGCAATG CGCTCGAAGA CTTCACGACG GCGCGCATCG AAGGCACGTA CAACGTCACG
CAGCGCCTTA CGCTGACCTA CGCGCTCGGC TACGACCAGG CCGCGACCGA ATCGACGCAA
CTGACGGCAG GCGGCACGAA GGACCTTGCG ACGCTCGGTT TCAACTACCG GCTCGATCCT
CACTGGTTCG GCGGTGCACG CTACGAATAT GCGCGCTTTC GTGGCCAGGA CCGCTCGTAC
CTCGGCAACG GGGGGCTCGT CGAGGCGAAC CTCGGCTACA AGATCAAGGC CGATTACCCC
GACTACACGA TCCGTGTCGT GTTCGCGCAC GGTCAGTACA ACGCGACGGG CACGCCGGGC
GAACGCCTGC GCGTGCTGTT GCCGGACAAC ACGCCGTTCA CGGCCGCGTC GTTCATGCCA
CAGACTTTCA CGCAAGGCGG CCTGCTGTTC TCGTTCGGCG ACGATCTGCC CGAACAGTAC
TCGAAGGGAT GGCGGCCGAT GTTCACAGGC GGCCCGATAC GCGACTCGCG TGCGGGCTGG
TCGGGACAAG CCGGACTCGG CATCGCGGGC AGCGTGTTCG GCCACGACCA GATGCTGATT
TACGGCGCGT ATCAGGGCGT TTCGTCGAAT CACTCGACAT CGGTGAAGGA AGTCGGCGCG
CGGTATCGCT ACCTGTATTA A
|
|---|
| Protein sequence | MSTSPATPDR ERLFSPAVLL VLGLLVGVML ALAFPREKIE SRLLAGAKVD SLTIAYLEAW
LRVDPNNADV LSELTREYLT GQRISDATHV LERLSHSSDA NARQRALAIR VSIAQQRLYA
LKSNDPTRPA RIRELDALLH EALDYQWDNE QLNMLAQQAR GLSDNDLAAR YYTVLAKSDP
EHAREWLAAL AQTQLGNQQH RAAADAWFAA QAQATSRDEE RAAFIAGLKA LQSGNDMAAT
MQAADQHIGD LADDPDTLRF LANLALAAGR PDLAAKYVKR LMKMSGLERE RALSQAASYE
PRRTREPALS EHRATHRVWL HAAWYRPHSS RAAALRRALS KGSEEDTQGA HLVRIAAAEP
PAPASDATAA DYELAYRVFL ANGDVANAQR IAQSAVDRDP LSIGWRERLA QVAEWNRRQD
IALANYVAIA KMRGTDDDWK KVARLAPGLN DNAAMLAVML HQADRQPGNV KLLDAVVFSY
ERVADPDSAL RFLQSRFKGA LRREAMERYA QVAESKGDDE LALRTWRELE RSYGPNAAYG
LKIGTMLYTR TQFDAALAAM NEAKRAAPAS NNDFWRFYAL LADSNQSEHD ARLGYRQLIA
GGKADPQDYE VMTNFFHDSP LDAGRLAEYA YRHGGSTRML SEALYGYQRA HAWGRIGTLL
ASLTPEQLQA AEQSPAFLLA RAEYERQAGE NDAALHDIER AVTLDPNNSE ARAAHIWVLN
ERGTDAALLA ALRRHADDAE TDPPLWPAYA AAWLRIGDGR KALHYLHKQA AQAKQGPLWR
LTFADALELN GRADEAWRVR KQAWMELARR RRDPSSATQL SAAEQDELRG RYTALTQLYA
DGDRSRAVLI DMLRADRNAT GSDDPAGSEL GDIGQLPPAK QDDIRKRQRL YSSIAREAAI
SWAQNEDASD MERAWLEKQY IDDSQRPVYA EAQLAINDGD VNELARLLDT LPDLVPRQSR
VDAQALTGRT SAAQTSAFES LTREPDDEVM QALAREQLLS NAQALAGAFR YVDQGSLRFT
EESATGSVRL TPSQNLQFRY QQRDQTVDGS QLAYAPKHDR LAEAIYGHKG PYDEQRVTLG
RRNALEDFTT ARIEGTYNVT QRLTLTYALG YDQAATESTQ LTAGGTKDLA TLGFNYRLDP
HWFGGARYEY ARFRGQDRSY LGNGGLVEAN LGYKIKADYP DYTIRVVFAH GQYNATGTPG
ERLRVLLPDN TPFTAASFMP QTFTQGGLLF SFGDDLPEQY SKGWRPMFTG GPIRDSRAGW
SGQAGLGIAG SVFGHDQMLI YGAYQGVSSN HSTSVKEVGA RYRYLY
|
|---|
| |