| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_3462 |
|---|
| Symbol | |
|---|
| ID | 6201062 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | + |
|---|
| Start bp | 3935400 |
|---|
| End bp | 3937058 |
|---|
| Gene Length | 1659 bp |
|---|
| Protein Length | 552 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641707415 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001834508 |
|---|
| Protein GI | 182680362 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0173201 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTAT CAATACAGCA AGCACAAAGC TTCGGGACGC ATGGCCGCAC ATTAGCCAGA
CGGCTTCTCA TCAAGCTGCT GCTTCTTGCC GGGTTGATCG TCCCCTTTCC TCCGCCGATT
CAGGCCGAGC CCGCCACGAC CGCGCAAATT TGGCAGCGCG GCGAACTCGG CGATCCGGGC
TCACTGGATC CCCACAAGGC GACCACGGTC ATCGAGGGCC ATGTCCTCGC CGAGCTTTAC
GAAGGGCTGG TCATTCTCGA TGCGGAAGGG CGCCTGCAAC CGGGTGTTGC TTCGCACTGG
TGCGTGAGTG AGGATCGGCG CGTCTATCGC TTTCATTTGC GCCCCGATGC GCAATGGTCG
AACGGCGACA AAGTGACGGC ACAAGATTTC GTCTATGCCT TTCGCCGCCT TATGGATCCC
AAGACCGGGG CGCCTTATGC CAATATTCTC TATACGCTGA AAAATGCGGA AAAGGTCAAT
AAAGGGCAAT TGCCGGTGGA AGCGCTCGGT GTGCAGGCGC CCGCTGACGA TCGTCTCGAA
ATCACGCTCG ATGAGCCGGT TCCCTATCTG CTCGCGCAAC TCACGCATGT GACGGCGAAA
CCTCTCCACC GCCGTTCGAT TGAAACCTAT GGCAGCGATT TCGTGCATCC TGGCCATCTT
GTCACCAATG GCCCCTTCAT GCTGGCGGAA TTCTCGCCCA ACGATCGTCT CGTCCTTGTC
AAGAACCCGC ATCATTACGA TGCGGCGCGC ATCGGGCTCG ACAAAGAGAT TTTCTATCCG
CTGGAAGATC GTTCGGCCGC TTTGCGCCGG TTCCTGGCCG GCGAAATCCA GTCCTATAGC
GATGTGCCCG TCGATCAGAT CCGCTTCGTG CGCCGAACAC TGGGCGACCA ATTCAAGCTC
GCCCCTAATC TCGGCACTTA CTATTACGCA CTCGACACGC GGCGCCCGCC CTTCGATGAT
ATTCGCGTGC GCAAGGCTCT CTCGATGGTG ATCGACCGCG ATTTTCTCGC CGAACGAATC
TGGGGCGGCA CGATGGAGCC GGGCTATAGT TTCGTCCCGC CCGGCATTGA ATCCTACGGC
ACGCCGGCCG AACTCGCCTT CAAGGATAAA ACGCCCATCG AGCGGGAAGA TGAGGCCAAA
AAGCTCCTGG CCGAGGCGGG TTTTGGGCCG AGCGGCAAGA CGCTCACCGT CGAGATTCGC
TATAATATTT CGGAAAACCA CCGCGCCACG GCCGTCGCCG TCGCCGATAT GTGGAAACAG
ATTGGCGTCG AGACCACGCT TGTCGCCAGT GACGCAACCA GCCATTATGC CTTCATGCAT
GAGCGCCGGC CCTTCAATGT TCTCCGTTAC GGCTGGTTCG CCGATTTTCC AGATGCGGAA
AATTTCCTGT TTCTCGCCGA AAGCGGCAAC AAGGGTCTCA ATATTTCGAG CTTCAGCAAC
GAGACCTATG ATTCATTGAT GCGCGATGCC GCTCAAGAGG ATGATGCAAC GCGGCGCACC
GCGCTTTTGC ACCAGGCGGA GGCCTTACTG CTCGCCGAGG GTCCCTATGT GCCGCTGCTC
ATCTTCAAAT CAAAAAATCT GATCTCTCCG AAACTGCGCG GCTGGCACAC CAATGCGCTC
GATGTGCATC GTGGCCGTTA TATATCGATC GCGCCATGA
|
|---|
| Protein sequence | MNVSIQQAQS FGTHGRTLAR RLLIKLLLLA GLIVPFPPPI QAEPATTAQI WQRGELGDPG
SLDPHKATTV IEGHVLAELY EGLVILDAEG RLQPGVASHW CVSEDRRVYR FHLRPDAQWS
NGDKVTAQDF VYAFRRLMDP KTGAPYANIL YTLKNAEKVN KGQLPVEALG VQAPADDRLE
ITLDEPVPYL LAQLTHVTAK PLHRRSIETY GSDFVHPGHL VTNGPFMLAE FSPNDRLVLV
KNPHHYDAAR IGLDKEIFYP LEDRSAALRR FLAGEIQSYS DVPVDQIRFV RRTLGDQFKL
APNLGTYYYA LDTRRPPFDD IRVRKALSMV IDRDFLAERI WGGTMEPGYS FVPPGIESYG
TPAELAFKDK TPIEREDEAK KLLAEAGFGP SGKTLTVEIR YNISENHRAT AVAVADMWKQ
IGVETTLVAS DATSHYAFMH ERRPFNVLRY GWFADFPDAE NFLFLAESGN KGLNISSFSN
ETYDSLMRDA AQEDDATRRT ALLHQAEALL LAEGPYVPLL IFKSKNLISP KLRGWHTNAL
DVHRGRYISI AP
|
|---|
| |