| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_5311 |
|---|
| Symbol | |
|---|
| ID | 6128121 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | + |
|---|
| Start bp | 2422765 |
|---|
| End bp | 2424723 |
|---|
| Gene Length | 1959 bp |
|---|
| Protein Length | 652 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641652401 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001778928 |
|---|
| Protein GI | 170737668 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.616526 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.118581 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAGCATC GTCCGGGATG GGGGAGGGCG CGCCGTCTGC TGGCAGGCGC ATGGTTGCTC
GCGGCCGGCA TGTCGATGGC CGACGGGGCC GTTGGATCGG ACGACGACGC GATCGGTCGG
CGCGCACCCG GTGAGGTCGA CATCGTCGCG GGCGACGTCA CGACGGGTGG CATCGTCGTG
GCGCCGGGGC GCGTCGCGAC GCCGTGTCAT CGGCTCGCCG GCCGACCGGC ATTCGACATT
GCATCGGCCG ATGGCCGCCG TCTTCCCGCG CGACTCGTCG CGGGCAACCA GGATCGGGAC
ATCTGCATCG TCGAAGCGAC GGGTCTCGAC GTCGCCGCCG TGCCGTTGAC GGCGCGAAGT
CCGGAAGCGG CCACGACCGC CTATCTGGCG GGCGCGCGAT TCGACCGCCG TGATCCCGTT
GCGCTGCGCG TGTGCTGCCA TGCATGGGCC GCGGACGGCG GCGTGCATTC CGGCCTGCTC
GCGTCGCCGA ATCCGGCGCC GCCGCACCTG CCCGAACCGG GCGCCGGCGT CTACGACGAG
CAAGGCAATC TGATCGGCAT GGTGGGCGTC CGAGCGGACA ATGCCGAGTC GCTCTACATG
GTCCTGCCAG TCGAGTGGAT GGCGACCGTG GCAGCGAAGA TGCCGGCCGT CGACCTGCCG
CTCGAAGCGA CCGCCTGGAT GAGCCAGGCG CGCGCGTACG CGGTGGCAAA CGACGTCGAC
GGGCTGATTC GCCATGACCT TGCATGGACG GCCGCGCGAC CGCAAAGCGC GTGGGCGTGG
AACAACCTCG GCAATGCCTA CCGCACGAGC CGGCTGCCCG ATCGCGGCGC GCTCAGCCTG
GCCGCCTATC GACGTTCGGT CGAAAACGAT CCGTCATACG CATTTGGCTG GTCTTCGCTC
GGCAACACCT ATGTCGAGCT GGGACAGATG GATCGCGCAC TCGACGCGTT TCATGCCGGC
ATGCGTGCCG ATCCGTCGGA CACGATACTG CGGATGAATC TCGGCATCGC GTATTTGCGG
CGCGGCGACA AGGCCGATGC GCGACCGTTG TTCGAACGAG GGGTACATGA ACTGTCTGGT
TCGCGCCAGG CCGATGCGTG GAGTCTGCTG GCCTCGACGC AGCCGGATGC CCAGGCCACC
ATCGGCGTGC TGCACGACGG GTTGAAGGCC TTTCCCGACG ATGCACGGCT TTGGTACGCA
CTCGGCCGTG CGCAATACGA TCTCGGCCAC CTGGCGGACG CGATCGCCAG TTACCAGCAC
GCGCTGAAGG CGCAGAAGGG CGGCGATCCC GCCGCAACCG CGCTCATCCA GGGCGCGCTG
ACCCAGGCGT ATGCGCTGCA AGGCCAGTCC GGCAACGCGT CCAGCGCGAT GCACAGTGCG
GTTGAAGCGG CGCCGGACAA TGCCGAATAC TGGTTGCGGC TCGGCGCGCT GTACATGACA
CAGTCGAACT ATGTCGATGC GTTGAGCGCG CTCGACCGGT CCCTCAAGCT GAACGACAGC
GACGCGAGGG CATGGCGGAT GCACGGCGTG ACGCTGGCGC AACTGGGCCA GCATGTGCAT
GCCGTCGCAT CGTTCCGGCG CGCGGTTGCG CTGGACGAAT CGCTGGCGGC GGGGTGGGTG
GTGCTCGCGG GCGAACTGAA CGAGATTGGT CAGCCCGACG AAGCGTCGGC CGCGGCTGCG
CATGCATTGA AGCTTGATCC GTCGAACCGG TTGGCGCGGG AGGCGATGGG CATCGCGGCG
ATTCGCGGCA AGCGGCCCGA TGCGGCAGTC GGGATCTTCG AGGAAATGAA CCGCACGTAT
CCCGATGACG CGCAAATCAT GGCCAACCTG GCGGTCGCTT ATCGTCGCAC CGGGCGGGTC
GATGACGCGG TGCAGTTGTA TCGCCGCGTC AAGACGCTCG ATTCGACGCT GGCCCAGCGG
CTGTACGATG CGGAGCTCAA GGGCGTCGCA ACGCCTTGA
|
|---|
| Protein sequence | MEHRPGWGRA RRLLAGAWLL AAGMSMADGA VGSDDDAIGR RAPGEVDIVA GDVTTGGIVV
APGRVATPCH RLAGRPAFDI ASADGRRLPA RLVAGNQDRD ICIVEATGLD VAAVPLTARS
PEAATTAYLA GARFDRRDPV ALRVCCHAWA ADGGVHSGLL ASPNPAPPHL PEPGAGVYDE
QGNLIGMVGV RADNAESLYM VLPVEWMATV AAKMPAVDLP LEATAWMSQA RAYAVANDVD
GLIRHDLAWT AARPQSAWAW NNLGNAYRTS RLPDRGALSL AAYRRSVEND PSYAFGWSSL
GNTYVELGQM DRALDAFHAG MRADPSDTIL RMNLGIAYLR RGDKADARPL FERGVHELSG
SRQADAWSLL ASTQPDAQAT IGVLHDGLKA FPDDARLWYA LGRAQYDLGH LADAIASYQH
ALKAQKGGDP AATALIQGAL TQAYALQGQS GNASSAMHSA VEAAPDNAEY WLRLGALYMT
QSNYVDALSA LDRSLKLNDS DARAWRMHGV TLAQLGQHVH AVASFRRAVA LDESLAAGWV
VLAGELNEIG QPDEASAAAA HALKLDPSNR LAREAMGIAA IRGKRPDAAV GIFEEMNRTY
PDDAQIMANL AVAYRRTGRV DDAVQLYRRV KTLDSTLAQR LYDAELKGVA TP
|
|---|
| |