| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_2977 |
|---|
| Symbol | |
|---|
| ID | 7860088 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | + |
|---|
| Start bp | 3319589 |
|---|
| End bp | 3320836 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643867075 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_002882984 |
|---|
| Protein GI | 229821458 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.576527 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCATCCC ACCGTCCGAT TGCTGCCGTC TCAGCCGCCG CGGCCGCCGC CGCACTGGTC
CTGGCTGGCT GCTCCTCGTC GTCCGGCGAC GACGACACCT TGTCGGTCTG GCTCCCGCCG
TTCGCAGCCG AGGATGCCGG GGTCAGTGAC CTCGAGCTGT GGAACGAGAT CATCACGCCG
TTCGAGGAGG AGCACGACGT CGACGTCGAC GTCACCATCG TCCCCTGGGA GAACTTCGAG
GAGCGTTTCC TCACGGGCTT CTCGAGCGGC GACGGCCCCG ACATCGGCTA CATGTACGCC
GAGATGATCG GCGACTACAT CTCGCGCGGT CAGCTCGCGA CGTTCACGGT CTCCGACGAG
CAGCGGGAGA CGTTCTACTT CACCGACATG GGCCAGTACG GCGACGGGCA GTACGGCCTC
CCGATGGTCG TCGGTGGCGC CCGTGTCCTG TTCTACAACA AGGCGATCCT CGACGAGGTC
GGCGTCGAGC CACCCCAGAC CTGGGAGGAC CTGGTCAGCG TCTCGAGCGC GGTGCAGGCC
GCCGGGTACG ACCCGCTGCT CATGGCGTGG GGCGAGCCTG GAGTCGGCGT GCTCGCCCAG
AACTACGTCA ACTTCCTGTG GCAGGCGGGC GGCGATCTGA TCGACGAGGA CGGAACCGCT
GCCACGTTCA ACTCGCCGGA AGGCCTCGAG GCCGCGCAGT TCCTCTACGA CCTGCGCTTC
ACGAACGGCA TCCTCCCCGA GAGCACCACG GCGCTGAACG GCGCCGATCT CAACGCCCAG
TTCGCCGCGG GGGACGCAGC CTTCGCGTTC GGTGCAGACG GCGAAGCCAC GACGTACGAG
GAAGCGGGCA TCGACGTCGG AGCCGTAGTC CTGGAGAACG CCGAGCGGTA CACGTTCGTC
GCCACGGACG TGCTCGTGAT GGCCGAGTCC TCGCCCAACA AGGACCTGGC GGAGCAGCTG
GCATGGTTCC TGCTGTCCGG TCCGTCGATG GACCAGTTCG GCACGATCAC CTCCTATCCG
CCGATCTCCA CGGAGCAGAC CACCGAGGCG CACCCGCTCT TCGCCGACCT GTACTCCGCC
GATGCTGACG TGCTGCGCGA GTACCCGGTG GTCCCGAACT CGGCGACGCT GTACACGAGC
CTGTACGAGA ATCTGCAGCA GATGCTGCTG GGCAGCAAGA CTCCCGAGCA GGCGTTGGCC
GACGCCGAGG TCGCGGCGAA CGAGTCGCTG GCCCGCAACG AGCAGTGA
|
|---|
| Protein sequence | MPSHRPIAAV SAAAAAAALV LAGCSSSSGD DDTLSVWLPP FAAEDAGVSD LELWNEIITP
FEEEHDVDVD VTIVPWENFE ERFLTGFSSG DGPDIGYMYA EMIGDYISRG QLATFTVSDE
QRETFYFTDM GQYGDGQYGL PMVVGGARVL FYNKAILDEV GVEPPQTWED LVSVSSAVQA
AGYDPLLMAW GEPGVGVLAQ NYVNFLWQAG GDLIDEDGTA ATFNSPEGLE AAQFLYDLRF
TNGILPESTT ALNGADLNAQ FAAGDAAFAF GADGEATTYE EAGIDVGAVV LENAERYTFV
ATDVLVMAES SPNKDLAEQL AWFLLSGPSM DQFGTITSYP PISTEQTTEA HPLFADLYSA
DADVLREYPV VPNSATLYTS LYENLQQMLL GSKTPEQALA DAEVAANESL ARNEQ
|
|---|
| |