Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_6486 |
Symbol | |
ID | 4315390 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008392 |
Strand | + |
Start bp | 1162103 |
End bp | 1162969 |
Gene Length | 867 bp |
Protein Length | 288 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638154330 |
Product | polysaccharide deacetylase |
Protein accession | YP_778364 |
Protein GI | 115361227 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.737576 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTTGAGAG AGATCCTTTC GCGATGTGTG ATGCTGTTCG GCATCGACCA TATCGTTCGC GTGTTGCTAT GGCGCGATCG AGTGGCGATC CTGCTCTACC ACGACCCCGA TCCGGCGACG CTGGATCGGC ACCTCACCTA CCTGAAAACC ATCTGCGATC TCGTGCCGCT CGACGCACGC GGTTTGCCGG GGAACGGGCG TCCGCGCGCG GCCATCACGT TTGACGACGG ACTGGCGGGG AATGCCCGCC TGCTGCCGAT CTTCATCAAG CACCAGGTGC GGCCGACGAT TTTCCTGTGC AGCCGCATTG TCTGCCGGCC GCGCAGACAC TGGTGGTTGC ATCCCGCCGC GGAGCGGCTT GGCGTCGAGC GCCTGAAGCG CCTCGCGAAC GATCAACGCC TCGCCGAGCT ACGTGTGCAC GGCTTTGACC AGGATGGCGA CGACGAGCCG ACAGGGCTGA ACCTGCAACA GCTCGAAGCG ATGCGCCCAT TCGTGGATTT TCAGGCGCAT ACGCGCTTTC ACCCGATACT GACGCGCTGC GGCGACAGCG AATGCAAAGC GGAAATCATC GAATCCCGGC GTGAAGTCGA GGCGTTGACC GGCAACCGTT GCGAACACTT CGCCTATCCG AACGGCAATT ACGGCAAGCG GGAAATCAAT CTGCTGAAGG CGGCGGGGTA CAAGAGCGCG CGAACCTGCG ATGTCGGCTG GAACGATCAC CGTAGCGACG CGTTTCGTCT GAAAACCATC ATCATCGACG ATCGCGCATC GCTCCGGTGG TTCATCTGCA ATTTGACGGG CATCCCGCCG TTTTTGGGTT ATCTGCGCAA GGGCGGCGGT TTGCGCGGGC ATTTTCCCCA GTTCTGA
|
Protein sequence | MLREILSRCV MLFGIDHIVR VLLWRDRVAI LLYHDPDPAT LDRHLTYLKT ICDLVPLDAR GLPGNGRPRA AITFDDGLAG NARLLPIFIK HQVRPTIFLC SRIVCRPRRH WWLHPAAERL GVERLKRLAN DQRLAELRVH GFDQDGDDEP TGLNLQQLEA MRPFVDFQAH TRFHPILTRC GDSECKAEII ESRREVEALT GNRCEHFAYP NGNYGKREIN LLKAAGYKSA RTCDVGWNDH RSDAFRLKTI IIDDRASLRW FICNLTGIPP FLGYLRKGGG LRGHFPQF
|
| |