| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5978 |
|---|
| Symbol | |
|---|
| ID | 4314882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | - |
|---|
| Start bp | 519715 |
|---|
| End bp | 523185 |
|---|
| Gene Length | 3471 bp |
|---|
| Protein Length | 1156 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638153822 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_777856 |
|---|
| Protein GI | 115360719 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4717] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.466468 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATCA GCCAGCTCGA TCTGATCAAG TACGGCAAGT TCACCGACGA GACGCTGCGC
TTTCCGTCGG CCGACCAGGA TTTCCACGTG ATCGTGGGGC CGAACGAGGC CGGCAAGTCG
ACGATCCGGA CGGCCGTGTC GGAGCTCCTG TTCGGGATGA AGCTGCAGAC GCCGCTCGAC
TTCCTGCATG CGACGCCCGA ACTGCGGATC GGCGGCGTGC TGGAGAGCGG CACCGGCGCG
CTCGCATTTC ATCGCGCCCG CGGGCGCAGC CCGCTGCGCA CCCCCGCCGA CGACAAGCTG
CCGGACGACT ATCTGAACGC CATCCTCGAC GGCGCGACGC GCGAATTCTT CGAGCAGATG
TTCGGGCTCG ACCACGGTCG GCTCGTCGAT GGCGGCCGCA GCATACTCGA CGCGTCCGAC
AAACTCGGCC AGGTGCTGTT CGAATCGGCG GCGGGCGTCG GCACGCTCGG GCCCGTGCGC
GAGGAACTCG ACGCGCGCGC GGGCGAGCTG TGGGCGCCGC GGCGCAGCGG CAGCGCATTC
GCGCAGGCGG AGACGTCGTT CAACGAGGCG GTCGGCGAAC TGAAGGCGGT CCAGGTGCGC
ACGCGCGACT GGGTCGATCG CAAGGAAGCG CGCGATGCGG TCGAACAGGA GATCGAGCAG
GCGCGCACGG AGCAGCGCCG CCTTGAAGCG CTGCGCTCGA AGCTCGAGCG CGTGCGCCGG
CTGGCGCCGT ACCTGAAGGA ATTGACGATC AAGGAAGCGG CGCTTGCCGA ACTGGGCGCC
GTCGTCGAAT TGCCGCCGAC CGCGTACGCA GACCTGCTGA AAGCGCAAGG CGATCTCGCG
GCCGAACAGA AGGTGCTCGA GGAGCGCCGT GCGGATCTGC TCGCGAAACG GCAGGCGCGC
GATGCGATCG ATCCGGATGC CGACGCGATC GCGCTCGAAC GCGACATCGA AGCACTCGAC
CAGTTGCGCG GCGCCTGCAT GAATCACGCA CAGGATCTGC TGTTGCTCGG CGCGGACGTC
GAGCGGCATC TGTCCGCCGC CGCTTCCGCC GCGGCTCAGC TCGGCTGGCC GACCGACGAG
GCGTCGCTGC GTGCGGCGCT GCCGAGCGCG CTGTCGCTGA AGACGGTCGC GAACCTGTTG
CGCGATCACG GCGCGCTGCA TCAGGCGCTG GCCGGCGCGC GCGAATCGCT CGACGAGCGC
ACGCAGGAAC TCGCGCACGC GCAGGAACAA CTGGCGCGTG TGTCCACGGT CGATGTGCCG
GAAGTGCTTC GCGCGGCGCT TGCCGACGCG CAGGGCTTTC GCAGCAGCGG CCAGCGCGAA
CAGGCGCTCG AACGCGACAT CGCCGCCGCG GAGCGCGCGC TCGCCGATGC GCTCGATGCG
CTGGGCCAGT GGCGCAAGCC GGTCGACGCG CTGCGGGTGC TCGATGTGCC GTCTGCGGCG
CGGCTCGGCG TGCTGCTCAA CGAAGCAAGC GAGCGCGCGA GCGCGGCGGC CGCCGCACGC
GATGCGCGCG ACGCCGCGCA GGAGGAACTC GAGCGGCTCG AACTGCAAGA GAAGCATTTC
GCCGAGACTC ACAAGGTCGT CACGACCGCC GAGGTGCTGG CGGCGCGCGC ACGTCGCGAC
GGTGCGTGGG GCGACATCCG CAGCGGCGCG GTCGATCTCG CAACGGGTGC GCCGGCCGTC
GACGATGCGA TTCGCCTCGC CGACGAACTC GTCGACGCGC AGCTCGGTGC CACGCAAGCG
GCGGCGACGT TGCAATCGCT GCGTCAGCAG GTCGAGTCCG CCCGCGCCGT ATTGACGCGC
CGACAGGCGG CCGTCGACGA GCGTGAGCGC GAGCTGGCCG CGCATCGCGA CGCATGGTCC
GACCTCGCGG CGACGGCCGG CGTGCCTGGC ATGCCGCTGG CGGCGATGGG CGACTGGCTC
GCGAAGCGCG ACGTGGTGTT TGCCGCGCAA CTCGAGCTTG ACCGTCAGCG CCGTGACTTC
GAGACGATCC GCGAAGCGCG GGCCGGCGCG GAAGCTGCGT TGCGTACGGC GCTGCGTCTG
GTATCGCGCG GCAGTGACGC CGACGGGCTG GCTGCGCTCA TCGCGATCGC CGAGACGTTC
GTGCAATCGG CCGAGAAGAC GCTCGCGCAG AAGGACAGCC TGGAGGACCG CGCGCGCGAA
GCCGAACGCG GATGCGCGAC GGCCCGTTCA CGCGCGGGCC AGGCCCAGGC GGCCTACGAT
GCGTGGCAAG CACAATGGCG CGATGCGCTC GCCGACGCGA AGCTGTCAGC GAATGCTGTG
ACGCTGGCTG CGGCGGAAGG GGCGCTCGGG CTTGCGAATA CGGTGACGGC CGAGCTGGCC
GCGGTCGATG CGCCGCGCAA CCGGATGGCC GCGATCCGCG CGGAGCTGGC GGCGCTCGAG
GCAGGCGCAC GGCGGCTCGC TGAAGCGCTC GAGCCCGCAT GGCTGGCGAG CGGCGACTGG
CTGGACGTTG CGCGCCGGTT GACGATGCGC GTGGCGGCCG CACGGGAAAC CGCGCGCGCG
ATCGATCGTG CCGACGAGGC GGTGCGGCAG GCCGACGGCA AGGTCGCCGA TGCGGCCGCC
GCGGTGGCCG GTGCGGATGC GCGCATTCAG CCGTTGCTGC AACTGGCCGG CGTCGCGTCG
ATCGACGCGG CGCTGCCGCT GGCCGAGCGA TCGGATCGGC AGCGCCAGCT TCGGCAGGCC
GTCGATGCCG CGAAGGAGGC GCTGGTGCGC GATGGCGACG GGTTGTCCCA GGCGGTCGTC
GAGGCGGAGG TCGCGGAACA GGACATCGCC GACGTGCCCG CGCATCTCGA AGCAGTGAAG
CAGGCGCTCG GCGACGTCGG CCAGCGCCTG AACGCACTCG CGCAGCAGCA GGTCGTCGCG
CAGCAGGCAT TCGGCGCGAT CGACGGCCAG GCGAGCGCGG CCGTCGCCGA GGCGAAGCGG
CAGGAAGCGC TGGCCGCGAT GGGCGACGCG GCCGAACAGT ATCTGGAAGC GGCGACCGCG
AGCCGTCTGC TGAAGTGGGC GACCGATCGC TATCGCGACC AGAAGCAGGG GCCGATGCTG
CGCCGGGCGG GCGAGATTTT CGCGGGGCTC ACGCTCGGCG AATTCGCGCG GCTGACCGTC
GACACCGAAC GGACGCCGCC CGCGCTATAC GCGCGGCGCA CCAAGGGCGC GTCGGTCGAG
GTCGCCGGCC TGAGCGAAGG CACGCGCGAC CAGCTGTTCC TCGCGCTGCG GATCGCGGCG
CTCGAACTGC AGCTCGCCAG CCGGACCGCG CTGCCGTTCG TTGCCGACGA TCTGTTCATC
AACTTCGACG ATGCGCGTGC GAAGGCGGGG CTCGAGGCGC TGCGCGATCT GTCGACGCGA
ACCCAGGTGC TGTTCCTGAC GCACCACGAT CACCTGCTGC CGCTCGTGCG GGACGTGTTC
GGCGCGCAGG TCAACGTGGT CGGGCTGCAG CGCGAGACGG CCGGCGCATG A
|
|---|
| Protein sequence | MRISQLDLIK YGKFTDETLR FPSADQDFHV IVGPNEAGKS TIRTAVSELL FGMKLQTPLD
FLHATPELRI GGVLESGTGA LAFHRARGRS PLRTPADDKL PDDYLNAILD GATREFFEQM
FGLDHGRLVD GGRSILDASD KLGQVLFESA AGVGTLGPVR EELDARAGEL WAPRRSGSAF
AQAETSFNEA VGELKAVQVR TRDWVDRKEA RDAVEQEIEQ ARTEQRRLEA LRSKLERVRR
LAPYLKELTI KEAALAELGA VVELPPTAYA DLLKAQGDLA AEQKVLEERR ADLLAKRQAR
DAIDPDADAI ALERDIEALD QLRGACMNHA QDLLLLGADV ERHLSAAASA AAQLGWPTDE
ASLRAALPSA LSLKTVANLL RDHGALHQAL AGARESLDER TQELAHAQEQ LARVSTVDVP
EVLRAALADA QGFRSSGQRE QALERDIAAA ERALADALDA LGQWRKPVDA LRVLDVPSAA
RLGVLLNEAS ERASAAAAAR DARDAAQEEL ERLELQEKHF AETHKVVTTA EVLAARARRD
GAWGDIRSGA VDLATGAPAV DDAIRLADEL VDAQLGATQA AATLQSLRQQ VESARAVLTR
RQAAVDERER ELAAHRDAWS DLAATAGVPG MPLAAMGDWL AKRDVVFAAQ LELDRQRRDF
ETIREARAGA EAALRTALRL VSRGSDADGL AALIAIAETF VQSAEKTLAQ KDSLEDRARE
AERGCATARS RAGQAQAAYD AWQAQWRDAL ADAKLSANAV TLAAAEGALG LANTVTAELA
AVDAPRNRMA AIRAELAALE AGARRLAEAL EPAWLASGDW LDVARRLTMR VAAARETARA
IDRADEAVRQ ADGKVADAAA AVAGADARIQ PLLQLAGVAS IDAALPLAER SDRQRQLRQA
VDAAKEALVR DGDGLSQAVV EAEVAEQDIA DVPAHLEAVK QALGDVGQRL NALAQQQVVA
QQAFGAIDGQ ASAAVAEAKR QEALAAMGDA AEQYLEAATA SRLLKWATDR YRDQKQGPML
RRAGEIFAGL TLGEFARLTV DTERTPPALY ARRTKGASVE VAGLSEGTRD QLFLALRIAA
LELQLASRTA LPFVADDLFI NFDDARAKAG LEALRDLSTR TQVLFLTHHD HLLPLVRDVF
GAQVNVVGLQ RETAGA
|
|---|
| |