| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5666 |
|---|
| Symbol | |
|---|
| ID | 4314556 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | + |
|---|
| Start bp | 103794 |
|---|
| End bp | 104609 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638153508 |
|---|
| Product | Linocin_M18 bacteriocin protein |
|---|
| Protein accession | YP_777547 |
|---|
| Protein GI | 115360410 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1659] Uncharacterized protein, linocin/CFP29 homolog |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.448725 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAACC TGCACCGCGA ACTCGCGCCG ATTGCCTCGT CCGCGTGGGC GCAGATCGAG
GAAGAAGTCG CCCGCACGTT CAAGCGCTCG GTGGCCGGGC GCCGCGTGGT CGACGTCGAA
GGCCCGGCGG GCCCGGGGCT GTCGGCCGTC GGCACCGGGC ATCTGCGCGA CGTCACCGCG
CCGCGCGAAC AGGTGAGCGC GCGGCTGCGC GAGGTCCGCA ACGTCGTCGA GCTGACGGTG
CCGTTCGAGC TGAGCCGCGA CGCGATCGAC AGCGTCGAGC GCGGCGCGCG CGACGCCGAC
TGGCAGCCGG CGAAGGACGC CGCGCAGCGC CTCGCGTTCG CGGAAGACGG CGCGATCTTC
GACGGCTATC TGGCCGCGGA CATCGTCGGC ATCCGCGAAG GCACGTCGAA CCGCAAGCTC
ATACTGCCGA CCGACGTCAG CGCGTACCCG GACGCGATCA GCGACGCGCT GGAAGCGCTG
CGGCTCGCCG GCGTCGACGG CCCGTACACG GTCGTGCTCG GCTCGGACGC CTACACGGCG
CTCAGCGAAG CGCGCGACCA GGGCTACCCG GTGCTCGGCC ACATCAAGCG CATCGTCAGC
GGCGAGATCG TGTGGGCGCC GGCGATCAGC GGCGGCTGCG TGCTGTCCAC CCGCGGCGGC
GACTACGAGC TGCACCTCGG CGAAGACGTG TCGATCGGCT ATACCAGCCA TACCGACAAG
GTCGTCCGCC TGTACCTGCG CGAAACGTTC ACGTTCCTGA TGCTGACGAG CGAGGCATCG
GTGGCCGTGG CGCCGCAGGC CAGCACGGCG GCCTGA
|
|---|
| Protein sequence | MNNLHRELAP IASSAWAQIE EEVARTFKRS VAGRRVVDVE GPAGPGLSAV GTGHLRDVTA
PREQVSARLR EVRNVVELTV PFELSRDAID SVERGARDAD WQPAKDAAQR LAFAEDGAIF
DGYLAADIVG IREGTSNRKL ILPTDVSAYP DAISDALEAL RLAGVDGPYT VVLGSDAYTA
LSEARDQGYP VLGHIKRIVS GEIVWAPAIS GGCVLSTRGG DYELHLGEDV SIGYTSHTDK
VVRLYLRETF TFLMLTSEAS VAVAPQASTA A
|
|---|
| |