| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4904 |
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| Symbol | |
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| ID | 4313795 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 1905995 |
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| End bp | 1907992 |
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| Gene Length | 1998 bp |
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| Protein Length | 665 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 638152747 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_776787 |
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| Protein GI | 115359649 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.399094 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGCAA ACCGTCGCCG TTCGTCCTCG TCTGTTCGAT CGCCCGCGCC GCGGCGCGTC
TCGCGTCGCG ACTTCATCGG CTGGACCGGC GCGCTCGCCG GCGGCGCCGC ACTCGGCGGA
CCGCTCGCGG CCACCCGCGC GTTCGCCGCG GCCGGCACGT CGCCCAATGC GGCGGTCGAC
CTGATCTGGG GCGAGCACGG TGCGGCGGCG CGCATCGCGG CATCGCTCGC GCATGTGTCG
CGCCTCGCGT TCCGCCGGCA CGACTTCGAC GTCACGCACT ACGGCGCACG CGCGTGCGCG
ACCGTCGCGC AGACGTCGCC GTACCCGGCG GCGAAATCTC CGGTCAGCCC CGGTTCCGAA
CTGACGACCG CGCCCGGCGC GTTCGACTCG CGTCCGGCGT TTCTCGCGGC GATCGACGCG
TGTGTGCGCG AAGGCGGCGG CCGCGTCGTC GTGCCGCCCG GCAACTGGTA CTGCGCGGGG
CCGATCGTGC TGCAGAGCAA CGTGAATTTC CACCTGAGCG CGAACTGCAC GATCTACTTC
AGCCCGAACC CGGCCGACTA CGCAAAGGAC GGCCCGGTCG ACTGCGGCGC GAATGGCCGC
TTGTACTACA GCCGCTGGCA GGCGAACGAC TGCCTGAACT ACGGCGCTCC CGTCTATGCG
CGCAACGCGA CGAACATCGC GCTGACCGGC GAAGGGCCGA CGTCGGTGCT GAACGGCCAG
GCAATGACGC CGTTCTCCGG CTCGGGCAGC AGCAGCGTGT GCTGGTGGAC CTACAAGGGT
TCGTCGGGTG CGTACGGTGC GGGCGCGACG GTGCCGGCCC AGAACTATGC GAATCCGAAC
AACGTCGACC TGCGGATCGT CGCGCCCGCG ATCCCCGACG CGCTCTATGC GCTGCTCACG
TCGCCCGTCA CGCCGTGGCA GCAGGATCAG AACTACCTGC CCGCGCTGTC CGAGGCCGGC
GTGCCGGTCG AGAAGCGCAT CTTCGGCCTC GGTCACTACC TGCGGCCGTG CATGGTCGAA
TTCATCGGCT GCACCAACGT GTTGATGGAG CACTACCAGA CGCAGAACAC GCCGTTCTGG
CAGCACCATC CGACCGCGAG CCGCAATGTC GTGATGCGCG GCGTGACGAC GAACAGCATC
GGCCCGAACA ACGACGGCTT CGATCCGGAT GCGTGCACCG ACGTGCTGTG CGAACGCTGC
ACGTTCAACA CCGGCGACGA CTGCATCGCG ATCAAGTCGG GCAAGGACCG CGACACGGAA
TACGGCCCCG CGAAGCGGCA CCTGATCCGC GACTGCACGA TGAACAGCGG GCACGGCGGC
ATCACGCTCG GCAGCGAGAT GGGCGGCGGC GTCGAGCAGA TCTACGCGAC CAACCTGTCG
ATGCTGAACG CGAACTGGCA GACCAACCCG CTGAACATCG CGATTCGCGT GAAGACGAAC
ATGAACCGGG GCGGCTACGT GAAGGACTTC CACGTGAAGG GCGTCACGCT GCCGAACGGC
GTGACGCTGA AGGGCGGCGG CTACGGCAGC GCGCTGCTCG CAGGCAGCCC GGTCAACGCG
AGCGTGCCGC TCGGCGTGGT GACGCCGTCG GCTGGCAATC CGTCGGCCGC GCAGGGCGGC
ATCGTCACGT TCGACTGCGA TTACCAGCCC GCGAACGACG CCGTGCGCAC GCGGCCGCCG
GTCGTGCAGA ACGTGACGAT CTCCGACGTG AAGGCGAGCA ACGTGACGCT GAACGGCGTG
ACCGCGTCGT GCTTCCAGGC GATCGTCGCG CAGGGGCCGG TCGCGTTCGA CTACAACGGC
ACGCCGCCGA CGCCGGCGGT GCAGCCGATC TCCGGCGTGA CGATCAGCAA CTGCGACTTC
GGCACGCCGG TCGCGTCGGG CACGCCGACC GTCACGTCGC CGGGGCCGAT CTACGCGTTC
AACGTGAGCG CGATGACGCT GACGAACGTG ACGATCGCCG GGCAGGCCGT CAACATGACG
GTCACCGATA CGCGGTGA
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| Protein sequence | MAANRRRSSS SVRSPAPRRV SRRDFIGWTG ALAGGAALGG PLAATRAFAA AGTSPNAAVD
LIWGEHGAAA RIAASLAHVS RLAFRRHDFD VTHYGARACA TVAQTSPYPA AKSPVSPGSE
LTTAPGAFDS RPAFLAAIDA CVREGGGRVV VPPGNWYCAG PIVLQSNVNF HLSANCTIYF
SPNPADYAKD GPVDCGANGR LYYSRWQAND CLNYGAPVYA RNATNIALTG EGPTSVLNGQ
AMTPFSGSGS SSVCWWTYKG SSGAYGAGAT VPAQNYANPN NVDLRIVAPA IPDALYALLT
SPVTPWQQDQ NYLPALSEAG VPVEKRIFGL GHYLRPCMVE FIGCTNVLME HYQTQNTPFW
QHHPTASRNV VMRGVTTNSI GPNNDGFDPD ACTDVLCERC TFNTGDDCIA IKSGKDRDTE
YGPAKRHLIR DCTMNSGHGG ITLGSEMGGG VEQIYATNLS MLNANWQTNP LNIAIRVKTN
MNRGGYVKDF HVKGVTLPNG VTLKGGGYGS ALLAGSPVNA SVPLGVVTPS AGNPSAAQGG
IVTFDCDYQP ANDAVRTRPP VVQNVTISDV KASNVTLNGV TASCFQAIVA QGPVAFDYNG
TPPTPAVQPI SGVTISNCDF GTPVASGTPT VTSPGPIYAF NVSAMTLTNV TIAGQAVNMT
VTDTR
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