Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_3990 |
Symbol | |
ID | 4312886 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | - |
Start bp | 899532 |
End bp | 900374 |
Gene Length | 843 bp |
Protein Length | 280 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 638151832 |
Product | extracellular solute-binding protein |
Protein accession | YP_775878 |
Protein GI | 115358740 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0601585 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGCTC GTTTCCCGCT TCGACGTTTC CTCCGCGGCG CGCTCGTGCC GCTTGCGTTC GTGTGCTCGC TCGCGGCCGC GGCTCCGCTG CAGACGGTGC GGCCCGGCAC CTTGCTGGTG GGCTCCGACC TCACGTATCC GCCTTACGCG TACCTCGAAG CCGGCAAGCC CGCCGGCTTC GACGCCGAGT TCGCGCGGCT GCTCGCGCGT CACCTGAAGC TGGAGCCGGT GTTCCTCGAC ACGCGGTTTC CGGACCTGAT CCTCGGCATG AAGGCGCGCC GCTTCGACGT CGTCGCGTCC GCGCTGTACG TGACGCCCGA TCGCGTGAAG CAGGTCGATT TCGTGCCGTA CCTGAAGACG GGCGCATCGC TGCTCGTCGC GAAGGGCAGC GCGTTCCTGC CGAAGACGCC GCAGGACCTG TGCGGCAAGC GGGTCGGCTC GATCAAGGGT GCGTCGTGGA CGCCGAAGCT GCGTGCGGTG TCGCAGGACA CGTGCAAGGC GGCCGGGCGC GGCGAGATCG CGATCCTCGA GTTTCCGACG TCGCCGGAAG CGACGTCGGC GCTGATGTCG AAGGCGGTCG ATGTCCAGAT CGAGGACGCG GCCGTCGCGC AGGGGATTCC GAAACAGACG AACGGGCGTG TCGACATCAG TTCGACGACG CTGTTGTATC CGATCGTCAT CGGCCTCGGC ATGACGAAGG GCGATAGCGG CCTGCAGGGT GCGCTCGAGC GCGCATTGAA CGATGCGAAG CGCAGCGGCG AGTACGGCAG CCTCGTGAAG AAATACGGGT TGCAGGAGCC GACGGCCGCC GACGTCGCCA ATGCGCTCAG TACTACGAAG TAG
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Protein sequence | MSARFPLRRF LRGALVPLAF VCSLAAAAPL QTVRPGTLLV GSDLTYPPYA YLEAGKPAGF DAEFARLLAR HLKLEPVFLD TRFPDLILGM KARRFDVVAS ALYVTPDRVK QVDFVPYLKT GASLLVAKGS AFLPKTPQDL CGKRVGSIKG ASWTPKLRAV SQDTCKAAGR GEIAILEFPT SPEATSALMS KAVDVQIEDA AVAQGIPKQT NGRVDISSTT LLYPIVIGLG MTKGDSGLQG ALERALNDAK RSGEYGSLVK KYGLQEPTAA DVANALSTTK
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