| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6008 |
|---|
| Symbol | |
|---|
| ID | 6181893 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 564025 |
|---|
| End bp | 565287 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641689138 |
|---|
| Product | Serine-type D-Ala-D-Ala carboxypeptidase |
|---|
| Protein accession | YP_001815997 |
|---|
| Protein GI | 172065285 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.960624 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.883146 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACTT CTGCTCCTCC CCGGCTTTTC CCGCGCGCCG CCAAGGGGCT GATGCGTCGC
GCGGCGGCGA TTGCACCGGC GCTCGCCGTC GGCATCGCGG TTTCCTCCTG CGGCGGCGAC
AGCTCGGTGA GCTCGGGCGA ACCGGCCTTC GCGACCGAGG CGCGTCCGCA GATCGACGCA
TTGCTCGCCG ATACGATGAC ACCCGGCGCC GTCGTCTATG TGCAATCACC ACACGGCAAC
TGGCTCGCGT CGTTCGGCAC GGCCGTGCGC GGCACGAACA CGCCGATCCC GACGAACGCG
CACTTCCGCG TCGGCAGCGT GACGAAGACG TGGACGGGCA CGGTGATCCT CCAACTCGTG
CAGGAAGGCA AGCTGCACCT GACCGATCAC GTCAGCCAGT ACGTCGCCAA CGTGCCGAAC
GGCGACTCGA TCACGGTCGA GCAATTGCTG ACCATGCGCA GCGGGCTCTA CAACTACTCG
ACGAATCTCG CGTTCAACCA GACGCTGGAT GCGCAGCCGA ACAAGGTGTG GACCACCGAT
GAGTTGCTGG GCATCGCGGA GAGCCAGCCC GTCTATTTCG CGCCGGGTGC GGATTTCCGC
TACTCGAACA CGAACACCGT GCTGCTCGGC CTGATCATCC AGCAGCTCAC CGGCATGAGC
GCCGCCGATG CGATCCGGAC GCGGCTGTTC GCGCCGCTCG GCCTGACCGA AACCGCCCTG
CCGCCGCAGG ACCACACGGC GCTGCCCGCG CCGTCGCCGC AGGGCTATCA ATGGGGCACC
AATACCGAGA CGATCGACAG CGACGCGCTG TCCCCGGCAC GCCAGGCGGC CGCGAAAAAC
GGCACGCTGC AGCCCGCCAA CGTGACGACC GTCAATACGT CGTGGGCATG GACGGCCGGT
TCCGGCATCT CGACCGCGAC CGAACTGGGT GCGTACGTGC AGCGCATGGT CGGCGGCGGC
TACCTGAACG CCGACCTGCA GGCGCAACGG CTCGCGAGTT GCACGCCGAT CGATCCGTCG
AATCCCGCAT CGGCCAGCTA CTGCATGGGG CTCGCGAAGT TCGGTACGTT CTACGGACAC
ACCGGTGAAA TACCGGGCTT CAATACTTTC GCCGGCTACG ACCCGGCGAC GAAGACGACG
ATCGTCACGT GGGCGAACAC GGGGGCCGGC CCCGACGGAC GCGCACCGGC CAACGAGATC
GCGCGAATCA TCATGGCCGA GCTCAGCAAG GCATCGGACG TGCCGAGCGA GGGGCGGCCG
TGA
|
|---|
| Protein sequence | MATSAPPRLF PRAAKGLMRR AAAIAPALAV GIAVSSCGGD SSVSSGEPAF ATEARPQIDA
LLADTMTPGA VVYVQSPHGN WLASFGTAVR GTNTPIPTNA HFRVGSVTKT WTGTVILQLV
QEGKLHLTDH VSQYVANVPN GDSITVEQLL TMRSGLYNYS TNLAFNQTLD AQPNKVWTTD
ELLGIAESQP VYFAPGADFR YSNTNTVLLG LIIQQLTGMS AADAIRTRLF APLGLTETAL
PPQDHTALPA PSPQGYQWGT NTETIDSDAL SPARQAAAKN GTLQPANVTT VNTSWAWTAG
SGISTATELG AYVQRMVGGG YLNADLQAQR LASCTPIDPS NPASASYCMG LAKFGTFYGH
TGEIPGFNTF AGYDPATKTT IVTWANTGAG PDGRAPANEI ARIIMAELSK ASDVPSEGRP
|
|---|
| |