| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5453 |
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| Symbol | |
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| ID | 6180919 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 2691761 |
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| End bp | 2693755 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641685208 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_001812113 |
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| Protein GI | 172064462 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.34591 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGCAA ACCGTCGCCG TTCGTCCTCG TCTGTCCGAT CACCCGCGCT GCGGCGGCTC
TCGCGTCGCG ATTTCATCGG CTGGACCGGT GCGCTCGCCG GCGGCGCCGT GGTCGGCGGA
CCGCTCGCGG CCACCCGCGC GTTCGCGGCC GGCACATCGC CCAATGCGGC GGTCGACCTG
ATCTGGGGCG AGCACGGTGC GGCGGCGCGC ATCGCGGCAT CGCTCGCGCA TGTGTCGCGT
CTCGCGTTCC GCAGGCACGA CTTCGACGTC ACGCACTACG GCGCACGCGC GTGCGCGACC
GTCGCGCAGA CGTCGCCGTA CCCGGCGGCG AAATCTCCGG TCAGCCCCGG TTCCGAACTG
ACGACCGCGC CCGGGGCGTT CGACTCGCGT CCGGCGTTTC TCGCGGCGAT CGACGCGTGC
GTGCGCGCAG GCGGCGGCCG CGTGGTCGTG CCGCCCGGCA ACTGGTACTG CGCGGGGCCG
ATCGTGCTGC AGAGCAACGT GAATTTCCAC CTGAGCGCGA ACTGCACGAT CTACTTCAGC
TCGAACCCGG CCGACTACGC GAAGGACGGC CCGGTCGACT GCGGCGCGAA CGGCCGCCTG
TACTACAGCC GCTGGCAGGC GAACGACTGC CTGAACTACG GCGCCCCCGT CTATGCGCGG
AATGCGACGA ACATCGCGCT GACCGGCGAA GGGCCGACAT CGGTGCTGAA CGGGCAGGCG
ATGACGCCGT TCTCCGGCTC GGGCAGCAGC AGCGTGTGCT GGTGGACCTA CAAGGGCTCG
TCGGGTGCAT ACGGTGCGGG CGCGACGGTG CCGGCCCAGA ATTCCGCGAA TCCGAACAAC
GTCGACCTGC GGATCGTCGC GCCCGCGATC CCCGACGCGC TTTATGCGCT GCTCACGTCG
CCCGTCACGC CGTGGCAGCA GGATCAGAAC TACCTGCCCG CGCTGTCCGA GGCCGGCGTG
CCGGTCGAGA AGCGCATCTT CGGCCTCGGT CACTACCTGC GGCCGTGCAT GGTCGAATTC
ATCGGCTGCA CCAACGTGCT GATGGAGCAC TACCAGACGC AGAACACGCC GTTCTGGCAG
CACCATCCGA CCGCGAGCCG CAACGTCGTG ATGCGCGGCG TGACGACGAA CAGCATCGGC
CCGAACAACG ACGGCTTCGA TCCGGATGCG TGCACCGCCG TGCTGTGCGA AGGCTGCACG
TTCAACACCG GCGACGACTG CATCGCGATC AAGTCGGGCA AGGACCGCGA CACGGAATAC
GGCCCCGCGA AGCGGCACCT GATCCGCGAC TGCACGATGA ACAGCGGGCA CGGCGGCATC
ACGCTGGGCA GCGAGATGGG CGGCGGCGTC GAGCAGATCT ACGCGACCAA CCTGTCGATG
CTGAACGCGA ACTGGCAGAC CAACCCGCTG AACATCGCGA TTCGCGTGAA GACGAACATG
AACCGGGGCG GCTACGTGAA GGACTTCCAC GTGAAGGGCG TCACGCTGCC GAACGGCGTG
ACGCTGAAGG GCGGCGGCTA CGGCAGTGCG CTGCTCGCGG GCAGCCCGGT CAACGCGAGC
GTGCCGCTCG GCGTGGCGAC GCCGTCGGCG GGCAATCCGT CGGCCGCGCA GGGCGGCATC
GTCACGTTCG ACTGCGACTA CCAGCCCGCG AACGACGCCG TGCGCACGCG GCCGCCGGTC
GTGCAGAACG TGACGATCTC CGACGTGAAG GCGAGCAACG TGACGCTGAA CGGCGTGACC
GCGTCGTGCT TCCAGGCGAT CGTCGCGCAA GGGCCGGTCG CGTTCGACTA CAACGGCACG
CCGCCGACGC CTGCCGTGCA GCCGATTTCG GGCGTGACGA TCAGTAACTG CGACTTCGGC
ACGCCGGTCG CGTCGGGCAC GCCGACCGTC ACGTCGCCGG GGCCGATCTA CGCGTTCAAC
GTGAGCGCGA TGACGCTGAC GAACGTGACG ATCGCCGGGC AGGCCGTCAA CATGACGGTC
ACCGACGCGC GGTGA
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| Protein sequence | MAANRRRSSS SVRSPALRRL SRRDFIGWTG ALAGGAVVGG PLAATRAFAA GTSPNAAVDL
IWGEHGAAAR IAASLAHVSR LAFRRHDFDV THYGARACAT VAQTSPYPAA KSPVSPGSEL
TTAPGAFDSR PAFLAAIDAC VRAGGGRVVV PPGNWYCAGP IVLQSNVNFH LSANCTIYFS
SNPADYAKDG PVDCGANGRL YYSRWQANDC LNYGAPVYAR NATNIALTGE GPTSVLNGQA
MTPFSGSGSS SVCWWTYKGS SGAYGAGATV PAQNSANPNN VDLRIVAPAI PDALYALLTS
PVTPWQQDQN YLPALSEAGV PVEKRIFGLG HYLRPCMVEF IGCTNVLMEH YQTQNTPFWQ
HHPTASRNVV MRGVTTNSIG PNNDGFDPDA CTAVLCEGCT FNTGDDCIAI KSGKDRDTEY
GPAKRHLIRD CTMNSGHGGI TLGSEMGGGV EQIYATNLSM LNANWQTNPL NIAIRVKTNM
NRGGYVKDFH VKGVTLPNGV TLKGGGYGSA LLAGSPVNAS VPLGVATPSA GNPSAAQGGI
VTFDCDYQPA NDAVRTRPPV VQNVTISDVK ASNVTLNGVT ASCFQAIVAQ GPVAFDYNGT
PPTPAVQPIS GVTISNCDFG TPVASGTPTV TSPGPIYAFN VSAMTLTNVT IAGQAVNMTV
TDAR
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