| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1550 |
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| Symbol | |
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| ID | 6175979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 1726032 |
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| End bp | 1726700 |
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| Gene Length | 669 bp |
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| Protein Length | 222 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641681311 |
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| Product | extracytoplasmic-function sigma-70 factor |
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| Protein accession | YP_001808253 |
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| Protein GI | 172060601 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.362931 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAATGG CGGAAGTGCT CGAACGCCCG GCAGCGGCAA TGGCGAACCC GTTCCTCGGC
AGTTATCCGG ACCTGCCGTC GCGCCTCGCG CCGCGTGCGC GTCGTGCCAA GGAACCGCGT
GCGCAGGGCG CGCTGCTCGA CGTGCTGATT GCCCATCGCG CGATGCTCGT CAACGTTGCG
CGCGGCTTTG TCGGCTGCGC GAGCCGCGCC GAGGACGTCG TCCACGACGT ATTCGTGAAG
CTCGTCGAAT TCCCGAACCA GGACGCGGTG CGCCAGCCGG TCGCGTACGT GACGCGGATG
GTGCGCAACG CATCGATCGA CGCGTGCCGC CGGCAAAGCC TCGAGAACGT CTATCACACG
GAAGAGGACG ACGGCTTCGA CGTGCCGTCG CCGGAACCGA CACCCGAGGC CGCGCTGATG
ACGCGCGACA CGCTGCGCCG CGTGTGGGCC GCGCTCGACG ACCTGCCGGC TCGCAGCCGG
GCCGCATTCG AGATGGTGCG GCTGCGCGAG GAGACGCTGC AAACCGCGGC GCGCGCATTG
AACGTGTCGC AGACGCTGGT GCATTTCATG GTGCGCGACG CGGAGCGGCA CTGCGCGGAG
TGTCTCGACG CGTGCCATCG CGGTGTCGCG TGTCCGGTGT TTCTCGGCGG TCGCGCGCGG
CGCCGGTAA
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| Protein sequence | MAMAEVLERP AAAMANPFLG SYPDLPSRLA PRARRAKEPR AQGALLDVLI AHRAMLVNVA
RGFVGCASRA EDVVHDVFVK LVEFPNQDAV RQPVAYVTRM VRNASIDACR RQSLENVYHT
EEDDGFDVPS PEPTPEAALM TRDTLRRVWA ALDDLPARSR AAFEMVRLRE ETLQTAARAL
NVSQTLVHFM VRDAERHCAE CLDACHRGVA CPVFLGGRAR RR
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