| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1507 |
|---|
| Symbol | |
|---|
| ID | 6176591 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 1669667 |
|---|
| End bp | 1670620 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641681268 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001808210 |
|---|
| Protein GI | 172060558 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCTT TCCTGCATGG TCTTGCGCTG CGGTACTTCG TCGAAGTGGC GCGCACCGGG
TCGATCAGCG ACGCATCGGC GCGGTTGCAC GTGGCTGTCT CGGCGATCAG CCGGCAGATC
GCGAAGCTCG AGAGCGAGCT TGGCGCGCCG CTGTTCGAGC GGCGGCCGCG CGGGATGACG
CTGTCGGAGG CCGGCGAACG GCTGCTGGGC TTCGCGCAGC GCAGCCTGCT GGAGGCCGAG
CACGTGATGA AGGAAATAGG CGGGCTGGAG GCGCTGCACG GCAGCCTGCT GAAGATCGTC
TGCTCGGAAG GGTTCGCGAT CGATTTCCTG CCGGGCGCGC TCGCGGGCTT CAAGGCGCGC
CACCCGGGCG TCGACTTCTC GGTGTGGGTC GTGTCGCCGG CGGAGGCGAC GCGGCGCGTG
CGCGACGGCG ACGCCGACAT CGGGCTGACG TTCAGCCTGG CGCCGGAGCA GGGCGTGCGC
GTCGAACACA CGGAGCGTGC GCCGGTCTTC GCGCTCGTGC GGCGCGACCA TCCGCTCGCG
GCGCGCGACT CGGTATCGCT CGCCGAGGTC GCGCGGCACC CGCATGTGCT GCCGGAGGCC
GGCACGACGG TGCGCCAGCT GATCGACATC GCGTGCGTGC TCGACGGGCT CATGCTCGAG
CCGGAACTGA CCAGCAACAA CACCGCCGTG ATGTACCGCT ATGCGCAGCG TACCGGCGCG
GTGATGTTCA CGGGGCTGCT GTCGGTGCGC GACCGCTTCG ACTCGGACGG CTTCGTCGTC
GTGCCCGTCA CGAACCCGCA GCTGCGCGAG CGCAGCATCC AGGTGCAGAC CATGGCGGGG
CGCGACCTGC CCGCGTCGGT ACGCGCGTTT CGCGACCATC TGGTCGACGT GATGAGCGCT
GCATCGCCCG CGCCAGCTGC CGCGCGCGGC CCGAGACGCC CGGGCATGAG ATAA
|
|---|
| Protein sequence | MAAFLHGLAL RYFVEVARTG SISDASARLH VAVSAISRQI AKLESELGAP LFERRPRGMT
LSEAGERLLG FAQRSLLEAE HVMKEIGGLE ALHGSLLKIV CSEGFAIDFL PGALAGFKAR
HPGVDFSVWV VSPAEATRRV RDGDADIGLT FSLAPEQGVR VEHTERAPVF ALVRRDHPLA
ARDSVSLAEV ARHPHVLPEA GTTVRQLIDI ACVLDGLMLE PELTSNNTAV MYRYAQRTGA
VMFTGLLSVR DRFDSDGFVV VPVTNPQLRE RSIQVQTMAG RDLPASVRAF RDHLVDVMSA
ASPAPAAARG PRRPGMR
|
|---|
| |