| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_A1171 |
|---|
| Symbol | rhsA2 |
|---|
| ID | 3692815 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1710b |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007435 |
|---|
| Strand | - |
|---|
| Start bp | 1467992 |
|---|
| End bp | 1472623 |
|---|
| Gene Length | 4632 bp |
|---|
| Protein Length | 1543 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637731425 |
|---|
| Product | rhsD protein |
|---|
| Protein accession | YP_336328 |
|---|
| Protein GI | 76817789 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3209] Rhs family protein |
|---|
| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCACTAC CCGCTGTCAA GCATCTGGAC CCCGTGGTCG GGATCGATGT TCATTCGGTA
CTGGTCACAC CCGGTACGCC GCCGGTGTTC CTGCCGCATC CCTACGTCGG TTTCATGCTC
GATCGCCGCG AGTACATCGA CGCCGCGCTG GGCGTGATCG GCAGTATCGT GTTTACGTTT
ACACCCCTCG GCAAGGAGGC GGAAGCCGGT CTGAAGTGGG CAAAGAAGCA GGCGAAGGCC
GAACTGATGA GCGACCCGCT GATTGCCGAA GGCGTGAAGC TCGGCAAGGA AGCGGCACCG
GTTGCTGGCG ACATCGCCGG CGCGGTCGGC GCTGGTGTGG GGATGGGAAG CATGATGGGC
CGCCCCATCT TCGTAAACGG CTTCTTGCGG GCCACGGCGG GTACCCACTC GTTTCATGTA
CCGGGTCTGC ACTTCCCGTT GGGCGAATCG TTCGCACCGC CGCCGGAGGA TTTTGAGCCT
TCGAACGACG GGGAATCGTA CATGGGCAGC AGGACGGTGT TGGCCAACAA CGATCCAATG
TCGTTCATGG CGCTGCCGGC GATGAGCTGC TGGTCGGTCG GGCTGGAGCC GCCACCGCAT
AACGGTGCGC ACACGCAGAG AACGGCGCTG TCGATGCCAA GTTCGGTGAT GCTGCCGATA
CCGGTGGGGC GGCCGGTGCT GGTGGGTGGG CCACCGGTCA TGAACATGGC GGCACTGGCT
TCGTCGCTGT TCAAGGCCTT TCGCGGAAGC GACTGGGCCA AGGCGCTGGC CGACAAGCTG
CATCTGAAAC CCGGTTTCCT GCGCTGCAAT GTGCTGCGCG CGGAGCCGGT GGACGCGATC
ACGGGTGAGG TCGTGGTTCA GCAGCATGAC TTCACGGTCC CCGGCCGCCT GCCGCTCGTG
TGGAACCGGT ATTACACCAG CCACGACACC TATGTCGGTG CGGTTGGTAT TGGCTGGCAG
ACGCCTGCCG ATATCCGGCT CGAACTGACC CGACATGAAG GCGCGGTGGG GGTAGTGGCG
TATTTCCCGG ATCACGCGAC GGCTTTCGAT GCAATACCGG ATGCAGCCGG GTGGCCAGCG
CGTGTGTATG ACTGGCAGCA CGGACAGGCG CTATATCGGC AGGACGACCG GCTGGTCCTG
CGCACGCGTG CCGGGTTCGA ATATGAGTTT GCGTTGCCCG CACACTGGCA ACACGCGCTG
GAGAGGCTCG CGGAAGACGC CACGTTGACG CTTCCTGTCG AACGGATGGC CGACCTCAAC
GGCAATGCGT GGGTGTTCGA GCGGGGACTG GACAGCAGCC TGACGCGTCT GGTCGAGTGG
AAGGCCGAGG AGGCGACCGG CCGCATGATC GCGTGCGCGG CGAGCGCAAG CAGCCGGGCG
GGAGACCACG TAAGTCTCCT CACCGCGCTG ACCCTGATCG ATGCCGGCGG CCGCGCGCAT
CCGCTTGTCA GTTACCAGCA CGACCGAAAC GTCGATCTGG TCGCCGCGAT CGATGCGATG
GGCCAGCCGC ATCGTTACGC CTACACCGAT GGGCACCGGA TGATTAGCCA CACGAGTGCC
CGGGGGATAT CTTTCTACTA CAGCCACCGT CGGCATGACG ACGGCGTATG GCGGGTCGAC
CATGCGTGGG GGGACAACGG TCTCTTCGAC TACCGCTTTA TCTATGATCC CGCGCGTCAT
GAAACCCGCA TCACTGATTC CCTGGGGCAC ACGACGCTCC TGCAATCAGA CGAACGTGGC
ATGCCGGTCG CCCGGATCGA TCCGCTCGGT GGTGTGACGA GTTACCGGTA CGACGCTCAG
GGGCGCACCA ACGCGGAAAC CGACCCTGCG GGACGCACCA CCGCGTGGGA ATACGACACG
TTCGCCAATC TGCTCATGCG GACCTTGCCG GATGGCACTG CGTTACGCAC CGAGTACAAC
ACCGGCCACA AGCCTGTGTG CGTGGCGGTG CCCGGAGGCG GGCAATGGCG CTACACGTGG
GACGAACGAG GTAACCTGCT CATGCAAACG ACGCCATCGC AAGCCAGCGT TCGCTACGCA
TACGATCAGT ATGGCCAACT CATAGCGCAC ACAGGGCCAC GTGGCACGGT GACGCGGTTC
GACTACGACC GGAGTGGCCT TCTCGCGGTG CGGACGGATG CACTCGGCCA TCGCACGCAG
TACACGCACG ACGCGCTTGG GAATCTGGTG CATGTTATCA ACGCACTAGG GCAGACGAGC
CGTTACGAAT ACGACAACAT CGGCAATCTG ACGCGCGCCA TCGAACCGGG CGGGCGCGAG
GTCCACTGTG TCTATGATGC CGATGGCAAT CTGGTGCGCT ACCGCGATGC GACCGGCAAC
GTGACTCAAC TGGTCTATAC GGCGCTTGGG CATATCAGCA AAAGACAGAC GCCGGACGGA
AACGTCGTCG AATACCGCTA CGACACCGAG GAACAACTGG TGGGCGTGGT CAATGGGCGC
GGCGAGATCT ACGAAATCAA GCGCGACGAG CTGGGCCGGA TTGTCGAGGA AACGGATTAC
TGGGGCCAAC CGAGGCATTA CCGGTACGGC GCCGCAGGCG AACTGCTCGA TATTACTGAT
CCTTTGGGAC AAACCATCGA GTATCGCTGC GATCGGCTCG GCCGCGTCGT GGAAAAGCGC
ATGCCGGACC CCCTGCACCC CGACGGCGTG CGCATCGACC GCTTCGTATA TGACCAGCAT
GGTGACCTCG TGCTTGCGGA GAACCCGTCG AGTCGCGTCG AGTTCCGCTA CGATGCAGAC
GGCCGGGTGA TCGCGGAAAG GCAGGGCGAC AATTTCACGA TTGCGAGCAC CTACGACGCA
AGCGGCAACC GGACCGAGCG CAAAACCCGG CTCGTCGCCG ACAGTGATGT GGTCGAACAT
ACCGTGCGGT ATGCATATGA CGCGCTGGAC GCGGTGATAG CGATCCAGAT CGACGATGCG
GCGCCTATTG TCCTTGAACG CGATGCAGTC GGTCAGGTTT GTGTCGAGCA ATTGAGCCCA
GAGTTGCGGC GCGAACTGTC GTACGAAGCG GGTGGGCAAC TAGCGAAGCA GACGCTGCTA
GGTGGTACCG GCCTGCTGTT CGCAAGCGAA TACGCGTACG ATGCGAATGA CGAGTTGGTA
GAGAAGCGCG ACTCGCGCAC CGGCGTTGAG CGCTTTCAGT ACGACCCGGT AGGCCGGATA
GTCGCGCATA CCGACCCTAC GGGCCGGCTG CGCAGTTACG TGTACGATCC TGCGGGCGAC
CTGCTGAAAA CGCACATCCA CGAACGCCGC ACGGCAGGCG CAACTGAGAT GACGCAGACT
GGCACATGGG TTCGAGAAGG CGAATTCGAA GGCCATTACC ACGCCTACGA TCGCGCGGGT
AACCTGATAC GCAGGCAGGA CGTCGGGCAG GACCTTACCC TGCGTTGGGA TGCGGCCGGC
CAACTGGCCG AAGCGGTAGC CGTGCGGCCG GCCATTGCTG GAGCGGGCGG GGGGCAGGTC
CGTATCGGCA CGCAGTACGA ATATGATGCG TTCCGTCGCC GGGTGGGCAA GCTTGTGCTT
ACCCGCGCGG CAGGCAGTGC GGAGCTGGTA TTGTCGCGCA TCAGTCGTTT CTTCTGGGAC
GGCAATACGC TGGTGGGCCA GTGCACGAGA GGTGGCGGCG AGGGAGGCGG TACGGCGATA
CCGGATGCGG GCGATCGAAT GCCAGCAGCG CAGTTCATCC CGGTCCGTGA CAATAGGGAT
GACGCACCGG TGTCCGGGTT TGAGCATGCG TATGAGTGGG TCTACTATCC AGGAATGTTC
CGGCCGCTCG CGGTAGTGCA TTGTGATCTG GCAGCGACCA GAGCATCTGT GCCGACGACA
ACAAATTTGC TGCCGCTCAT CGGGGCAGTG TACTTCTTCC AGAGCGATCT GAACGGAGCG
CCGGTCCAGA TGCATGCACC CGGTGGAAGA GTCGTATGGG AAGCGCGTTA CGACCCAATC
GGAAGAAGCG AGCAACTCGG ACTTCAACTG GTCGAGCAGC CGGTTAGGTT GCAGGGGCAG
TATTTCGATG CAGAAACTGG CCTCAATTAC AATCGGCATC GATATTTTGA TCCGAATTCT
GGGATCTTTA TTAGCCAGGA TCCAATTCGA CTGTCTGGTG GTTTAAATCT CTATCAATAT
GCGCCGGAGA CAAACAATTG GATAGATCCT CTTGGTTGTT CTGGGCACAG GCGACGACAT
GAAAAAATGC CTCCCGAGGG CGCGCCATTG ACCACAGGAA ATCTATTTCG CCATGCACAA
GACGAAGGGA TTCCCCCCAT ATTCAGTCGC AAGGATGACG AATTTTATCA CAGGCTTATT
GAGATATATG CTGGAACTGG TGTGTTGAAC GCCTATATCA GGGGCATAGC AAGTCATGTC
GAACCAAAGG CGGGCTTGAT TTTGAACGAG GATGGAAATG GCTGGAAGAT CGGATCATTG
TACATTAACT ATCCCGATGG TCCGTGTCCA GGTTGTCGGA GACTCATGCC GTTTATACTC
AATGACGGCA GCATTCTTTA CGTAACATTT CCCACGCTAG GATTGGACGG GTATTCTTAC
GGCCATTTCC ATGGCGGAGT GTCAGGATTT TTCAGGGAGG GCACACCATG CAACTTACGC
CATCCTGAAT GA
|
|---|
| Protein sequence | MALPAVKHLD PVVGIDVHSV LVTPGTPPVF LPHPYVGFML DRREYIDAAL GVIGSIVFTF
TPLGKEAEAG LKWAKKQAKA ELMSDPLIAE GVKLGKEAAP VAGDIAGAVG AGVGMGSMMG
RPIFVNGFLR ATAGTHSFHV PGLHFPLGES FAPPPEDFEP SNDGESYMGS RTVLANNDPM
SFMALPAMSC WSVGLEPPPH NGAHTQRTAL SMPSSVMLPI PVGRPVLVGG PPVMNMAALA
SSLFKAFRGS DWAKALADKL HLKPGFLRCN VLRAEPVDAI TGEVVVQQHD FTVPGRLPLV
WNRYYTSHDT YVGAVGIGWQ TPADIRLELT RHEGAVGVVA YFPDHATAFD AIPDAAGWPA
RVYDWQHGQA LYRQDDRLVL RTRAGFEYEF ALPAHWQHAL ERLAEDATLT LPVERMADLN
GNAWVFERGL DSSLTRLVEW KAEEATGRMI ACAASASSRA GDHVSLLTAL TLIDAGGRAH
PLVSYQHDRN VDLVAAIDAM GQPHRYAYTD GHRMISHTSA RGISFYYSHR RHDDGVWRVD
HAWGDNGLFD YRFIYDPARH ETRITDSLGH TTLLQSDERG MPVARIDPLG GVTSYRYDAQ
GRTNAETDPA GRTTAWEYDT FANLLMRTLP DGTALRTEYN TGHKPVCVAV PGGGQWRYTW
DERGNLLMQT TPSQASVRYA YDQYGQLIAH TGPRGTVTRF DYDRSGLLAV RTDALGHRTQ
YTHDALGNLV HVINALGQTS RYEYDNIGNL TRAIEPGGRE VHCVYDADGN LVRYRDATGN
VTQLVYTALG HISKRQTPDG NVVEYRYDTE EQLVGVVNGR GEIYEIKRDE LGRIVEETDY
WGQPRHYRYG AAGELLDITD PLGQTIEYRC DRLGRVVEKR MPDPLHPDGV RIDRFVYDQH
GDLVLAENPS SRVEFRYDAD GRVIAERQGD NFTIASTYDA SGNRTERKTR LVADSDVVEH
TVRYAYDALD AVIAIQIDDA APIVLERDAV GQVCVEQLSP ELRRELSYEA GGQLAKQTLL
GGTGLLFASE YAYDANDELV EKRDSRTGVE RFQYDPVGRI VAHTDPTGRL RSYVYDPAGD
LLKTHIHERR TAGATEMTQT GTWVREGEFE GHYHAYDRAG NLIRRQDVGQ DLTLRWDAAG
QLAEAVAVRP AIAGAGGGQV RIGTQYEYDA FRRRVGKLVL TRAAGSAELV LSRISRFFWD
GNTLVGQCTR GGGEGGGTAI PDAGDRMPAA QFIPVRDNRD DAPVSGFEHA YEWVYYPGMF
RPLAVVHCDL AATRASVPTT TNLLPLIGAV YFFQSDLNGA PVQMHAPGGR VVWEARYDPI
GRSEQLGLQL VEQPVRLQGQ YFDAETGLNY NRHRYFDPNS GIFISQDPIR LSGGLNLYQY
APETNNWIDP LGCSGHRRRH EKMPPEGAPL TTGNLFRHAQ DEGIPPIFSR KDDEFYHRLI
EIYAGTGVLN AYIRGIASHV EPKAGLILNE DGNGWKIGSL YINYPDGPCP GCRRLMPFIL
NDGSILYVTF PTLGLDGYSY GHFHGGVSGF FREGTPCNLR HPE
|
|---|
| |