Gene BURPS1106A_3979 details

Gene Information

• Locus tag: BURPS1106A_3979
• ID: 4900529
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1106a
• Kingdom: Bacteria
• Replicon accession: NC_009076
• Strand: -
• Start bp: 3880669
• End bp: 3881313
• Gene Length: 645 bp
• Protein Length: 214 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 640137205
• Product: chitin-binding domain-containing protein
• Protein accession: YP_001068199
• Protein GI: 126454236
• COG category: [S] Function unknown
• COG ID: [COG3397] Uncharacterized protein conserved in bacteria

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.173041
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCACTA CCGATTCGAG AAGCGCAACG AAGTCTTCGT CCATTTCTCC GCGGCATGGC 
CGCGTCATCA CGCCCGAGTC GCGCGCCGTG TATCTCTACG AAGCAGGAAG GCTCGATTTC 
GGGCAGGTCA ATGAGCTGGA GGGCGGCAAA TTCTTTCCCG CGACCCAAAG CGGGCTCAGA 
GATCCGGACG CGCCGGACGA CGTCGCCAAC GGCATGCCGC CGCGCGACGG CGAAATCGCG 
AGCGGCGGGC GCACGGCGGA TGCCCGCGCG CAACTCAACG AACCCGATTC CGTTGCGCAT 
TGGCAGAAAC ATGCGGTGCG ATCGGGGCAA TCGCTGCAAA TCTCGTGGTC GTATTCGATG 
CCGCACAAGA CGCGGCGCTG GACTTACTGG ATCACGAAGC CGGGATGGGA CACCCAGGCG 
CGGCTTGCGC GCGCGCATTT CGAGCCCGAT CCGCTGAAGG TCTACCTGAA CACGTATCAG 
CCGTACTGGG GGCCGGATGC GGACAAGGAG TTGATCCCCC AGGGCGAGAC GATTCATGAA 
TTCAACCTGC CGACTCGCAC CGGCTATCAC GTACTGCTCG CGGTGTGGGA CGTCGCCGAT 
ACCGCCAACG CGTTCTATCA GGTGATCGAT CTGAATTTCG CGTGA 

 

Protein sequence

MSTTDSRSAT KSSSISPRHG RVITPESRAV YLYEAGRLDF GQVNELEGGK FFPATQSGLR 
DPDAPDDVAN GMPPRDGEIA SGGRTADARA QLNEPDSVAH WQKHAVRSGQ SLQISWSYSM 
PHKTRRWTYW ITKPGWDTQA RLARAHFEPD PLKVYLNTYQ PYWGPDADKE LIPQGETIHE 
FNLPTRTGYH VLLAVWDVAD TANAFYQVID LNFA