Gene BLD_0944 details

Gene Information

• Locus tag: BLD_0944
• Symbol: def
• ID: 6364366
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Bifidobacterium longum DJO10A
• Kingdom: Bacteria
• Replicon accession: NC_010816
• Strand: -
• Start bp: 1087742
• End bp: 1088395
• Gene Length: 654 bp
• Protein Length: 217 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 642680112
• Product: peptide deformylase
• Protein accession: YP_001954888
• Protein GI: 189439807
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTGGAA AGAACGCCAA AGTCGACCTC GAACTCAACC GTGATGTCGA ACAACTCATC 
AAAACCGGCG GCAAGGAGAA GCTCCTGCCC ATCGTGCAGG CCGGCGAACC GGTGTTGCGC 
CAACGGACAG TGGCCTATAA TGGCCAGCTT TCCAAGCGTA CGCTCGCCAA ACTCATCGAT 
ACGATGCACA CCACCATGCT GGAGGCACCC GGCGTGGGGC TCGCCGCCAC CCAGATCGGC 
TTGGGGCTCG CGCTCGCCGT GGTCGAAGAC CACGTGCGCG ACGACGAGGA TGATCCGCGC 
GAAATCGCGG AATTCCCCTT CCACGTGATC ATCAACCCGA GCTACAAACC CACCAGCGAC 
AAAACCGCCT CGTTCTACGA GGGCTGCCTG AGCTTCGACG GATACCAAGC TGTGCGCAAG 
CGTTGGCTCG ACATCACCGC CGAATGGGAT GATGAAGACG GCAAACACCA CAGCGAGCCG 
CTGCACGGCT GGCCCGCACG CATCTTCCAG CACGAAACCG ATCATTTGAG CGGCGAGTTG 
TATATCGATC GCGCCGAAAT CCGTTCGCTG ACCACCAACG AGAACCTCGA GGACTACTGG 
TGCGAAGACC CGGTGCCCAC CGAGGCCGCT GAAGAGCTCG GTTTCGCACT ATGA 

 

Protein sequence

MFGKNAKVDL ELNRDVEQLI KTGGKEKLLP IVQAGEPVLR QRTVAYNGQL SKRTLAKLID 
TMHTTMLEAP GVGLAATQIG LGLALAVVED HVRDDEDDPR EIAEFPFHVI INPSYKPTSD 
KTASFYEGCL SFDGYQAVRK RWLDITAEWD DEDGKHHSEP LHGWPARIFQ HETDHLSGEL 
YIDRAEIRSL TTNENLEDYW CEDPVPTEAA EELGFAL