| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_p0060 |
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| Symbol | |
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| ID | 5148630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009475 |
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| Strand | + |
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| Start bp | 42124 |
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| End bp | 43557 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640538987 |
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| Product | secretion protein HlyD precursor |
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| Protein accession | YP_001220420 |
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| Protein GI | 148240919 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGACGC TGCGTCTACT GACGACGACC CTCGCGCTGG GCGGAGCCTT GGCTCTGGTC
GGCTACTGGT ACGCCAGCGG CGGGCGCTGG CCGGCCCATG CCGACCTAAC CATTTCGGCG
GCCGCCGCAG ACCGGAAGCC GCTCTACTAT CGAGATCCCG GCGGAGCTCC GTCCTGGTCG
GCGGTGCCGA AAAAGGATGC GCAAGGCCGC GATTACGTGC CCGTCTACGA CGAGGACGGG
CCGGCGACCG AGCCGCCGAA GGCGAAGCCG CAACAGGCGA ACGCCTCCCG AAAGGTCCTG
TACTACCGGA ATCCGATGGG ACTGCCGGAC ACATCGCCGG TGCCTAAGAA GGATCCGATG
GGGATGGACT ACGTCCCCGT GTACGAAGGC GACGAGACCG ACGACGGCAC GGTGAAGCTT
TCGCCTGGCA AGATCCAGCG CACGGGCGTG AAATCCGAGC CCGCCGAGCG GCGCAGCATC
AGCGTGGCGG TGAAGGCGCC CGGCACGATC CAGCTCGACG AGCGCCGCAT CTCGGTGATC
GCGATGCGGG CTGAAAGCTT CGTGCAGAAG ATCGCCGACG TCACCACGGG CACCCGGGTG
AAGGCGGGCC AGCCCTTGAT GGAGGTCTAC AGTTCGGCCA TCGCTTCCGC TGCGGCGGAA
TATCTCGCGA CGCTCAATTC GAAGGTGGTG GGGGGCGTGG AGGCCTACGG CCGCGGCTCG
CGTCAGCGCC TGACGAACCT CGACGTTCCG GAGCCGGTCA TCACCGCGAT GGAGAAGTCG
AAGGTCGCTC CGGTCACGGT GCAGTGGACG GCGCCGCGCG ACGGCATCGT GCTCGAGCGC
AACGCGATCG AAGGCATGCG GGCCAACCCC GGCGACGTGC TGTTCCGCAT CGCGGACACC
TCGGTGGTGT GGGCCCTCGT CGACGTCGCC GAGCGCGACC TCGGCAACAT CGTGGTGGGC
CAACCTGTGA CGATCCGGGC GCGCAGCTTC GCGGGGCGGA CCTTCTCCGG AAAGATCGCC
GTGATTTATC CGCAGGTGAA CCGCGACACG CGTACCGCTC GCGTCCGGAT CGAGCTTTCC
AATCCGGACG CGGCCTTGCT GCCGGATATG TATGTCGATG CCGACATCGA CACCGCGGAC
GGCTCGCCGG TCCTGTCCGT GCCGGATAGC TCGGTGCTCG ACACCGGGGC CCGCCAGGCC
GTTCTGGTGG ACAAGGGCGA AGGCAGGTTC GAGCCGCGCG AAGTGAAGCT CGGACGTAGG
GGCGGCGGCT ACGTCGAAAT CCGCGACGGC CTCAAAGATG GGGAGTCGGT CGTGACGTCG
GCGAACTTCC TGATCGACGC GGAAAGCAAC CTCAAGGCCG CGCTGAAGGG CTTCGCCGAG
GCGAACCCGG CACCGGACGC TGCGAGCGGC CACGCCCATG GAGAGCACAA ATGA
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| Protein sequence | MKTLRLLTTT LALGGALALV GYWYASGGRW PAHADLTISA AAADRKPLYY RDPGGAPSWS
AVPKKDAQGR DYVPVYDEDG PATEPPKAKP QQANASRKVL YYRNPMGLPD TSPVPKKDPM
GMDYVPVYEG DETDDGTVKL SPGKIQRTGV KSEPAERRSI SVAVKAPGTI QLDERRISVI
AMRAESFVQK IADVTTGTRV KAGQPLMEVY SSAIASAAAE YLATLNSKVV GGVEAYGRGS
RQRLTNLDVP EPVITAMEKS KVAPVTVQWT APRDGIVLER NAIEGMRANP GDVLFRIADT
SVVWALVDVA ERDLGNIVVG QPVTIRARSF AGRTFSGKIA VIYPQVNRDT RTARVRIELS
NPDAALLPDM YVDADIDTAD GSPVLSVPDS SVLDTGARQA VLVDKGEGRF EPREVKLGRR
GGGYVEIRDG LKDGESVVTS ANFLIDAESN LKAALKGFAE ANPAPDAASG HAHGEHK
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