| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_6161 |
|---|
| Symbol | |
|---|
| ID | 5155319 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 6392812 |
|---|
| End bp | 6394080 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640560872 |
|---|
| Product | Bcr/CflA family drug resistance transporter |
|---|
| Protein accession | YP_001241991 |
|---|
| Protein GI | 148257406 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.245445 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0414342 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAGCA GACCGCCCCG GACCGCGACC ATCCAGGCGG CTCCCTCGCG CACGGTGCTG
ATCCTGCTGG TCGTGATGAC TGGGCTGGCG CCGATCTCGC TTTATCTGCT GGTCCCGGCA
CTGCCGCTGC TGGCCACCAC GTTCGGGCGC GATGCCTCCG TGGTCCAGAT GACGGTGTCG
TTCTACATGA TCGGCATCGC GATCTCGCAA TTGCTGCTCG GTCCGCTGTC GGACCGGTTC
GGCCGGCGGC CGGTGATGCT GGCGGGGCTG GCATTGTCGA TCGTTGCGAG CTTCGGCTGC
ATCTTCGCTG CCACCCTGCC CCAACTGATC GCGGCCCGCT TTTTCCAGGC GCTCGGCGGC
GCCAGCGGCA TGGTGATCAG CCGCGCCATC ATCCGCGATC TCTATCCGCG TGAGCGGATC
GGGGCGATGA TCAGCCTCGT CGTTGCGGTC ATGATGATCG CGCAGATGCT ATCGCCGCTC
ACCGGCGGCC TGATCGAGAT CGCGTTCGGC TGGCATGCGA TCTTCTACGT CGTCGCCGCC
GTCTCGGTTG CCGTCGCCAT CGCCGTGACG ATGGCACTGC CGGAAACACG TCCGACCCGC
GTCGAAGGGG CGAGCTTCCG GCGCGATGTC ACGGCCCTCG TCAAGAGCCG CGCCTTCCTC
GGCTACATGC TGTGCCAGGT GCTGGCGTCG CAGATCATCT TCGCCTTCGC CGGCGGCGGT
CCCTATATCG TCGAGGTGCA GATGGGCCGC TCCTCGGCGG AATATGGCGC GTGGTTTGCG
ACCACGGGCT TTGCGTATTT CGTCGGCAAC CTGTTCTGCG TGCGCTACGC GCCGCGCCAT
TCGCTCGACC GGCTGATCTG GTTCGGACTG GGGCTGCAGC TCACCGGCGC CGCGCTGAAC
TTCACGTGGA GCCTGTTCGG ATTCAATCAG GTGCCGTCGG TGCTGTTCGG GACGCAGATG
CTGCTGATGT TCGCCAATGC CGCGGTCATG GCGAACTCGG CCGCCGGCGC CATCAGCGTG
CGCCCTGGCG CCGCCGGCAC CGCCTCGGGC GCGATGGGCT TCCTGCAGAT GGGCGTGGGC
GCGCTGACGT CGCAGCTCGG CGCCTATCTC GGCGGTCATT ACGCCACCAC GCTGCCGCTG
ACATCGGCGA TCCTGGCGCT CTCCCTGGCC TGCGCCTGCA GCATGATCTT CCTGGTGCCG
CGCACGGCGG TCACGGTGAC GAAGGAGCTG ATCGAACGAG CCGAGGAGGA TGAAGCCGGG
GTGATGTGA
|
|---|
| Protein sequence | MISRPPRTAT IQAAPSRTVL ILLVVMTGLA PISLYLLVPA LPLLATTFGR DASVVQMTVS
FYMIGIAISQ LLLGPLSDRF GRRPVMLAGL ALSIVASFGC IFAATLPQLI AARFFQALGG
ASGMVISRAI IRDLYPRERI GAMISLVVAV MMIAQMLSPL TGGLIEIAFG WHAIFYVVAA
VSVAVAIAVT MALPETRPTR VEGASFRRDV TALVKSRAFL GYMLCQVLAS QIIFAFAGGG
PYIVEVQMGR SSAEYGAWFA TTGFAYFVGN LFCVRYAPRH SLDRLIWFGL GLQLTGAALN
FTWSLFGFNQ VPSVLFGTQM LLMFANAAVM ANSAAGAISV RPGAAGTASG AMGFLQMGVG
ALTSQLGAYL GGHYATTLPL TSAILALSLA CACSMIFLVP RTAVTVTKEL IERAEEDEAG
VM
|
|---|
| |