Gene Avi_9801 details

Gene Information

• Locus tag: Avi_9801
• Symbol: repB
• ID: 7379946
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011986
• Strand: +
• Start bp: 1481
• End bp: 2518
• Gene Length: 1038 bp
• Protein Length: 345 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 643648235
• Product: replication protein B
• Protein accession: YP_002546472
• Protein GI: 222102331
• COG category: [K] Transcription
• COG ID: [COG1475] Predicted transcriptional regulators
• TIGRFAM ID: [TIGR00180] ParB-like partition proteins; [TIGR03454] plasmid partitioning protein RepB

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTCGTA AGAATTTGCT GTCAGGGCTT CTTGATGATG CGGATAAAAA CCCGCCTTCT 
TTACCAATCT CTGACGCCAC TCCCACGACC TTACGTCCGA CAACAAGAGG TCTCGGCGCA 
CTTGGCGCAG TGACGCGAAG CATCGATGAG CTCGCGGCAC GGGCGGACGC TGCCCGAGAT 
TTGGAAGAGA GACTAGCTGC AGGCGAAACG ATTGTTGATT TGGACGTCGA TTTAATCGAC 
AGTTCATTTA TCAGCGACCG TGTTGGCATG GATGAAGTGG GCTTCAGAGA GCTCGTTGAG 
GCAATTAGTG TTCGTGGTCA GGATTCTCCA ATCCTGGTGC GTCCACATCC CGACAGAACT 
GGGCGGTTCC AGACCGTATT TGGCCACCGT CGCGTACGTG CCGCCAAAGA ATTGGGAATT 
TCTGTCCGGG CAGTCGTCAA GAAGCTCGAA GATAGAGACC ACGTGATAGC TCAAGGACAG 
GAAAATTCGC AGCGAGCGGA CCTGTCCTTT ATAGAGCGCG CCCTGTTCGC CCGTAATCTC 
GAACTAGGTA ATTTCGGCCG CGACACGATC ATGCTAGCTC TCGGTGCGGA TAAAACGACC 
GTGTCCAAGA TGCTTTCGGC GATCGAAAGA TTTCCTGAGG ATATCCTGGC AACGGTAACA 
CAGGCGAGGG CGCCAGGCCG CGACCGCTGG TATGGAATCG GCGCTGCATT GGGGAACCCT 
GCGATTGCGG CAAAGGCTCG AAACCTACTC ACCCATGACG ATTACGTCGC AGCTTCGCCG 
GAGAGCCGGT TTGAAATGCT CGAACGTTTG ATTCCGAAAG AGATGAAAGT CTCAAAGAAA 
GGTTCAACGG ACCAAAAATG GGTTAGTCCG AAGAACTTGA TAAAAGCAAC CATCAAGAAC 
AATGGCTCGG GTGTGACGAT TGCGCTTAAG CCATTCAAGA ATTCTGGTAA GGCGGCTGCT 
TTTGGCACTT ACCTGACCGA AAACCTTGAT CGCCTGTTCG CAGCGTTCGA GGATGATCAA 
CCGGAAAGTG GAGACTGA 

 

Protein sequence

MARKNLLSGL LDDADKNPPS LPISDATPTT LRPTTRGLGA LGAVTRSIDE LAARADAARD 
LEERLAAGET IVDLDVDLID SSFISDRVGM DEVGFRELVE AISVRGQDSP ILVRPHPDRT 
GRFQTVFGHR RVRAAKELGI SVRAVVKKLE DRDHVIAQGQ ENSQRADLSF IERALFARNL 
ELGNFGRDTI MLALGADKTT VSKMLSAIER FPEDILATVT QARAPGRDRW YGIGAALGNP 
AIAAKARNLL THDDYVAASP ESRFEMLERL IPKEMKVSKK GSTDQKWVSP KNLIKATIKN 
NGSGVTIALK PFKNSGKAAA FGTYLTENLD RLFAAFEDDQ PESGD