Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_9596 |
Symbol | traF |
ID | 7381940 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011991 |
Strand | + |
Start bp | 69435 |
End bp | 69968 |
Gene Length | 534 bp |
Protein Length | 177 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643653275 |
Product | conjugal transfer pilin processing protease TraF |
Protein accession | YP_002551446 |
Protein GI | 222109181 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4959] Type IV secretory pathway, protease TraF |
TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAGCGCCC GCCGCAACGC CCTCGCTATC CTTGGCGTCG GGGCCGTATT GATCGGCGGT ATCGCCGGCA CATTTGCGAT TGGTGGTTAC CGCATCAATT TTACGCCGTC ATATAACCTT GGCCTATGGC AGATCGGCGC TCTGGATCGA GAGGTTCGGC CAGGGGATCG AATATTTATC TGCCCACTCG CTGGCGCAGC CGTGTCGCTG GCACTTGAAC GTCACTATCT CCCGCGAGGG CTATGCCCTT CAGGTAGCGG TCCGCTCATC AAAACCGTGG CGGCGACTGC AGGTCAGTCG GTCGAAATTG GCGGCCAGGT CATCATCGAT GGCAAACCGC TTCATTCATC GCGCGTCCTC AAGGCTGACG CAGAAGGACG GCCCATGCCG GTCTATGCCG GCGGCACCAT TCCCGAGGGC AAGATTTTTC TACATTCCGA ATTTGTTGGT TCATATGACT CGAGATACTT TGGCCCACTC CCGGCCGACG GCGTCCTTGG CCTCGCGCGA GAAATTCTCA CGTTCTCTCC GTAA
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Protein sequence | MSARRNALAI LGVGAVLIGG IAGTFAIGGY RINFTPSYNL GLWQIGALDR EVRPGDRIFI CPLAGAAVSL ALERHYLPRG LCPSGSGPLI KTVAATAGQS VEIGGQVIID GKPLHSSRVL KADAEGRPMP VYAGGTIPEG KIFLHSEFVG SYDSRYFGPL PADGVLGLAR EILTFSP
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