Gene Avi_9001 details

Gene Information

• Locus tag: Avi_9001
• Symbol: repA
• ID: 7367867
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011984
• Strand: +
• Start bp: 109
• End bp: 1308
• Gene Length: 1200 bp
• Protein Length: 399 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 643644252
• Product: replication protein A
• Protein accession: YP_002542549
• Protein GI: 222083146
• COG category: [D] Cell cycle control, cell division, chromosome partitioning
• COG ID: [COG1192] ATPases involved in chromosome partitioning
• TIGRFAM ID: [TIGR03453] plasmid partitioning protein RepA

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGAAAATC CGGCTCAGCT TCAGAAGGCT ATTCATAAAC TGATCGGCGC TCATGCCCGA 
GACCTGTCGG GGGCCTTGCA TGAGCATCGT GTGAAGCTGT ACCCGCCGGA GGCGCGCAAA 
ACCCTGCGCT CCTTCTCGTC GACGGAAGCC GCCAAACTTA TTGGTGTCAA TGACGGATAC 
CTTCGCCACT TGTCAATTGA GGGCAAAGGT CCGCAGCCCG AGATCGGAAA CAACAATCGC 
CGCTCGTACA CCATCGAGAC GATCCAAGCC CTCCGCGAGT ATCTCGATCA AAACGGAAAG 
AACGATCGGC GCTATTCACC CAAGCGCTCG GGTAAGGAGC ATTTACAAGT CATCACCGTC 
GTCAATTTCA AGGGTGGTAG CGGAAAGACA ACGACCGCAG CGCACCTTGC TCAATATCTT 
GCTTTGAATG GCTACCGTGT TCTTGCAATC GATCTCGATC CACAGGCCAG TATGTCGGCA 
CTACACGGCT TTCAGCCCGA GTTCGACGTC AAGGACAACG AAACTCTGTA TGGCGCAATG 
CGGTACGACG AAGAACGTCG TCCGCTAAAG GACGTCATCA AGAAGACCTA CTTTACGAAT 
CTCGATTTAG TCCCTGGGAA TCTTGAGCTC ATGGAGTTCG AGCATGACAC GGCGAAAGTT 
CTCGGCTCCA ATGATCGCAA GAATATCTTC TTCACCCGAA TGGATGAAGC CATTGCCTCC 
GTCGCCGACA GTTATGATGT TGTCGTTGTC GACTGCCCTC CCCAACTAGG CTTTTTAACG 
ATTTCGGCAC TCTGCGCTGC GACTGCAGTG TTGGTAACCG TTCATCCTCA AATGCTCGAC 
GTCATGTCGA TGTGCCAGTT TCTTCTTATG ACATCTGAGC TGCTCAGCGT CGTTGCCGAT 
GCTGGTGGGA GCATGAATTA CGATTGGATG CGCTACCTCG TCACGCGCTA TGAGCCTGGC 
GACGGACCGC AGAACCAGAT GGTGTCCTTC ATGCGGACGA TGTTTGGAGA CCATGTTCTC 
AATCATCCAA TGTTGAAGAG CACCGCCATC TCCGATGCGG GGATCACCAA ACAAACGCTC 
TACGAGGTTA GCCGCGATCA GTTCACGCGC GCGACCTACG ATAGGGCGAT GGAGGCTCTT 
GAGAACGTCA ACTCTGAGAT TGAACAGTTG GTCCACAAGG CGTGGGGAAG ATCGTCATGA 

 

Protein sequence

MENPAQLQKA IHKLIGAHAR DLSGALHEHR VKLYPPEARK TLRSFSSTEA AKLIGVNDGY 
LRHLSIEGKG PQPEIGNNNR RSYTIETIQA LREYLDQNGK NDRRYSPKRS GKEHLQVITV 
VNFKGGSGKT TTAAHLAQYL ALNGYRVLAI DLDPQASMSA LHGFQPEFDV KDNETLYGAM 
RYDEERRPLK DVIKKTYFTN LDLVPGNLEL MEFEHDTAKV LGSNDRKNIF FTRMDEAIAS 
VADSYDVVVV DCPPQLGFLT ISALCAATAV LVTVHPQMLD VMSMCQFLLM TSELLSVVAD 
AGGSMNYDWM RYLVTRYEPG DGPQNQMVSF MRTMFGDHVL NHPMLKSTAI SDAGITKQTL 
YEVSRDQFTR ATYDRAMEAL ENVNSEIEQL VHKAWGRSS