| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8333 |
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| Symbol | trbC |
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| ID | 7365281 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 256509 |
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| End bp | 256913 |
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| Gene Length | 405 bp |
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| Protein Length | 134 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643641886 |
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| Product | conjugal transfer protein TrbC |
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| Protein accession | YP_002540183 |
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| Protein GI | 222080319 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3838] Type IV secretory pathway, VirB2 components (pilins) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.653427 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCGCGTA AGACCCATCT TATCCTCACA GTCACAGCAC TGGCCCTCGT CTCGCTCGGC
TCCCTTGATG GGGCACTGGC ATCTTCCGGT GGCGGCAGCC TTCCCTGGGA ATCCCCACTC
CAGCAGATCC AGCAGTCGAT TACCGGTCCC GTGGCCGGCT TCATCGCACT TGCGGCCGTC
GCCATCGCCG GTGCGATGCT GATCTTCGGC GGGGAGCTGA ACGACTTTGC CCGACGGCTT
TGCTACGTCG CGCTGGTCGG TGGCGTGCTT CTCGGCGCCA CCCAGATCGT CGCCCTGTTT
GGCGCGACAG GGGCGTCGAT CGGCGAGCTT CATTCGCAGG CTGGCCCGTT CGATTATTCC
CCCTCCGCCA CGCTCATTGA AAGAGGGGAG GGGAATCGTG GCTGA
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| Protein sequence | MSRKTHLILT VTALALVSLG SLDGALASSG GGSLPWESPL QQIQQSITGP VAGFIALAAV
AIAGAMLIFG GELNDFARRL CYVALVGGVL LGATQIVALF GATGASIGEL HSQAGPFDYS
PSATLIERGE GNRG
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