Gene Avi_8227 details

Gene Information

• Locus tag: Avi_8227
• Symbol: virB1
• ID: 7365117
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011982
• Strand: -
• Start bp: 168516
• End bp: 169232
• Gene Length: 717 bp
• Protein Length: 238 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643641815
• Product: type IV secretion system lytic transglycosylase VirB1
• Protein accession: YP_002540112
• Protein GI: 222080248

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.998898
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTGAAGG CGGCGGGATC TTTCGGGATC ATTCTTCTGA TGATCCAGCC AAGCAAAGCT 
GCGCCGCTGT CTTTCGCCGA ATTCAACCAG CTCGCTCGCG AATGCGCGCC TTCAGTCGCT 
CCATCTACAC TCGGAGCGAT TGCGAAGGTC GAAAGCCAGT TTGATCCACT CGTGCTGCAT 
GACAATACGA CCGGTGAAAC TCTTCATTGC AGGAACCATG CGGATGCTAC GCAAAGCGTA 
GACCATCGTC TCGTAGCCGG GCATTCAGTT GATGTAGGCC TAATGCAAGT AAACTCCAAG 
AATTTCGCGA ACTTGGGCCT GACTCCCGGC ACTGCAATCG AGCCATGCGC GTCCTTGTCC 
GCCGCGGCGC ATCTGCTTGT ACGGCATTAT CGTGGCGGCA ACACTGTAGA GTCAAAACAA 
CTCGCCCTCA GGCGGGCAAT CTCGGCTTAC AATACCGGCG ACCCAACACG CGGGTTCGCA 
AACGGTTATG TGCGAAGGGT CGAAGTGGCG GCTCAGCAAC TCGTGCCGCC GCTGGCTCAG 
TCGGCGAAAA AATCCGATCG TGGTGAGCCA AACTCAGAAG AACCCTGGAA CGTCTGGGAG 
TCATACGAGC GCTCCCACTC AGCAATTGGA GCGGACGGCT CATCCGCGCC GCCGGAGGCG 
CAGGAACTGA ATGACCGCGC GCCCTCCGAA CAAGATCAAG TTTTTCGAAC TGACTGA 

 

Protein sequence

MLKAAGSFGI ILLMIQPSKA APLSFAEFNQ LARECAPSVA PSTLGAIAKV ESQFDPLVLH 
DNTTGETLHC RNHADATQSV DHRLVAGHSV DVGLMQVNSK NFANLGLTPG TAIEPCASLS 
AAAHLLVRHY RGGNTVESKQ LALRRAISAY NTGDPTRGFA NGYVRRVEVA AQQLVPPLAQ 
SAKKSDRGEP NSEEPWNVWE SYERSHSAIG ADGSSAPPEA QELNDRAPSE QDQVFRTD