| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7677 |
|---|
| Symbol | |
|---|
| ID | 7380313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | + |
|---|
| Start bp | 607733 |
|---|
| End bp | 608221 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643641665 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002539962 |
|---|
| Protein GI | 222102923 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1846] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00437604 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACTCGA AGACCCCTCC CTTACTTCCG CGTTTTCTGC GTGCCATCTA CTGGTTTGAC
GAGGCGCTGA GAGCCTCCCA GGAGTTGCAA GGGCAAACAC CGGTCACACG GGCGCAGGGC
ATGCTTTTGA TCAACATTGC CCTTGGGGAG CGGCGTCCGA CGCGCTTGGC GCGTACCATG
GGCGTCACCA AACAAGCGGT CAGCCTTATG CTGGGAGACC TGACCGCAGC GGGCTACATT
TTTATCAAGC CAGACCCAGA AGATGCACGC GCATCACTCA TTGAGTTCAG CCCGCAAGGT
CAGACTGAAT TGGAGAATAT CTTTGCCACG CTGGAGCACC TCGAAGACCA TCTGGCAACG
GTTTTAGGTC AGGACCGAAT GTCCGTCCTG CGGGCCGCAT TGGGGATGGA CTGGGGCACG
CCACCCGCAT TGGGATCCAA AGAGGCCCAC ACGCCTGATG CGACGGAAAG CGCGATCCAG
AAAAAATGA
|
|---|
| Protein sequence | MDSKTPPLLP RFLRAIYWFD EALRASQELQ GQTPVTRAQG MLLINIALGE RRPTRLARTM
GVTKQAVSLM LGDLTAAGYI FIKPDPEDAR ASLIEFSPQG QTELENIFAT LEHLEDHLAT
VLGQDRMSVL RAALGMDWGT PPALGSKEAH TPDATESAIQ KK
|
|---|
| |