| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7349 |
|---|
| Symbol | |
|---|
| ID | 7380559 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | + |
|---|
| Start bp | 327547 |
|---|
| End bp | 329352 |
|---|
| Gene Length | 1806 bp |
|---|
| Protein Length | 601 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643641422 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002539719 |
|---|
| Protein GI | 222102680 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAGCA AGCATATTGG CAGCTTGCCG CCTCATCTTG CCGATTTCCA ACCGGCCGCA
GCTGCCGACG TCCATGCGTT GCTGCAACGA CTGGGCGTCG AACATCTCAC CGCCCTAAAG
GCCGCAGGCC GTACGGCGCT GGAGGCCGAA TGGCCGCAGA TCTTTGCCTC TCGTTACCGT
GACTATACCC AGACAGGAAA TCGTTCGCGC TTCGAAGACC TGTATTTCCG TCGCCGCCTG
ATGCTGAACG ATCTGGTTCT GGCGGAATGC GCCAAGGACA CAGGTGAGGG CGGAGACGAC
TTCATCGACG CCATTATCGA TGGCGTCATT CTGATCTGTG AGGAAAGCGG GTGGCAATTG
CCAGCGCATA ACGCCTATGG ACGCGGCGGT CCGCGCCAGC CCTTGCCGGA TCCTGATGAC
CCTGTGGTCG ATCTCTTCGC GGCGGAAACG GCGGCGAACC TGGCAACCCT GGTTTGGCTG
CTAAGGCCTG CCCTTGCCCA ACGCGATCCG CGCCTGCCTG CCCGCATAGA ACAGGAGATC
CACCGCCGTA TTATCACCCC TTATCTTACC CGGCATTTCT GGTGGATGGG GCAGGGAAAC
GAGAGGATGA ACAACTGGAC TGCCTGGATC ACCCAGAACG TCCTGATCGC CACGTTTTCC
CTGCCCACGA GCCAGGAGAT TCGCCGTGCA GTGCTGGTCA AAGCGCTGGG CAGTCTCGAT
GCCTTTCTCA AGGACTATGC CGAGGACGGC GCCTGCGAGG AAGGCGTGCT CTACTATCGC
CATGCCGCTC TCTGTCTGTT TGGTGCTATG ACCGTGCTGG ATCAGGTCGT GCCGGACCTG
TGCCGTCCGC TTTGGCAGGC AGCCAAGATC CGCAATATGG CGGAATACAT CCTCAATATG
CATGTGTCTG GACGGCATTA TTTCAATTTT GCCGATTCAT CAGCAGTTCT GGAGCCCTGT
AGCATCAGAG AATATCTGTT CGGCAAAGCG GTTGGCTCGA AGGCGCTGAT GGATTTTGCC
GCTGCCGATC TTCAACAATC CGCAGATCCG CTGCTGTCGA AAGAGTGGAA CCTTTGGCAC
CGGTTGATGG CAGCCACACG CTTGCCGGAC GTTAAGCCTG CGCCAGCAAA GCCGGCGGCA
AAAGGTGATA TTTTCTACCC CGGCACCGGG CTTTTCATCG CCCGCGACAA CCGTTTCGAT
CTGGCGGTGA AGGGTGGGCA TAACGGCGAA AGCCATAATC ATAACGATGT CGGCAGCCTG
ACGCTTTACA AGAACGGACA ACCATTTCTC ATCGATATCG GTGTCGAAAC CTACACGGCC
AAGACTTTCT CGCCGCAGCG TTACGAGATC TGGACGATGC AATCGGCCTA CCACAACCTT
CCAACCTTTG CGGGCGTCAT GCAGCAGGAG GGGCCGGAAT GTGCCGCACG CGATGTCGAG
ACGGCTTTCG AGGTGGAGGA GGCCCGCATT TCGCTGGAGA TAGCCGCAGC TTACCCGAAA
GAAGCAGCGC TGTGCTCTTA TCGCCGCAGC GTCAGGCTCA TTCGCGGCAG CCATGTTGAG
ATTATCGACG AGCATGACGG TGACAAGCCT GCGGTCCTGT CACTGATGAC CTGCGTTGCG
CCCCGCTCGC AGGCGGGGCG GCTGGTCCTG GACGGGCTCG GCGAAATTAG CGTGAGCGGT
GCGGCAGAGC CAATCATCGA GGCAATCGAC ATCGGCGATC CCCGGCTGCG GCAGGCTTGG
CCGGAGAGAA TTTTCCGTAT TCTGCTGCCG TTTGAGACAT CCCGCTTGTC GCTGACGATT
ACTTGA
|
|---|
| Protein sequence | MFSKHIGSLP PHLADFQPAA AADVHALLQR LGVEHLTALK AAGRTALEAE WPQIFASRYR
DYTQTGNRSR FEDLYFRRRL MLNDLVLAEC AKDTGEGGDD FIDAIIDGVI LICEESGWQL
PAHNAYGRGG PRQPLPDPDD PVVDLFAAET AANLATLVWL LRPALAQRDP RLPARIEQEI
HRRIITPYLT RHFWWMGQGN ERMNNWTAWI TQNVLIATFS LPTSQEIRRA VLVKALGSLD
AFLKDYAEDG ACEEGVLYYR HAALCLFGAM TVLDQVVPDL CRPLWQAAKI RNMAEYILNM
HVSGRHYFNF ADSSAVLEPC SIREYLFGKA VGSKALMDFA AADLQQSADP LLSKEWNLWH
RLMAATRLPD VKPAPAKPAA KGDIFYPGTG LFIARDNRFD LAVKGGHNGE SHNHNDVGSL
TLYKNGQPFL IDIGVETYTA KTFSPQRYEI WTMQSAYHNL PTFAGVMQQE GPECAARDVE
TAFEVEEARI SLEIAAAYPK EAALCSYRRS VRLIRGSHVE IIDEHDGDKP AVLSLMTCVA
PRSQAGRLVL DGLGEISVSG AAEPIIEAID IGDPRLRQAW PERIFRILLP FETSRLSLTI
T
|
|---|
| |