| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7282 |
|---|
| Symbol | |
|---|
| ID | 7380508 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | + |
|---|
| Start bp | 239488 |
|---|
| End bp | 240621 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643641372 |
|---|
| Product | HlyD family secretion protein |
|---|
| Protein accession | YP_002539669 |
|---|
| Protein GI | 222102630 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.548499 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATGCGCA AATTTTCTAC CAGGTCTCTC GCGACAGTGC TCGCCTTGGG GTCGTTTTTC
ATGGTCGCCT TCGCCGCCCG AAGCCAGGAT GGTGAACAAA AGACGGATCA AGCGGCCGCA
CTGAGCGTGA GCTTGGTCAA GCCGGCGGTT TTGCTGTGGC CTGTTATTAT TCCCGCAAGT
GGTCGACTTG CCGCCTGGCA TGAAGCGACA ATTGCAGCAG AGACCAGCGG TATGAAGGTC
ACCGAAGTTA AAGCAGATGT TGGCGCACAC GTAAAAAAGG GCGATTTGCT GGTGCAGTTT
GCGCCGGAAT CTGCCCAGGC TGACCTGGAG CAACAACAAG CGAACGTTGA AAAAGCGGAA
GCCGATCTTG ATCAAGCAAT AGCGAATGGT GACCGCGCCC GAGGATTGAC AAGTTCTGGC
GCATTATCAA GCCAACAGAT AAAGGAATAT CTGATTACCG AGCGTAAAGC GAAAGCCTCC
CTCTTTTCGG CAAAGGCTGC GTTGGCTTCA TCTCAGCTCA CCTTGGACAG GACCAAGGTT
TACGCAGTGG ACGACGGGGT CATATCCGAG CGCTCCGCAT CTCTTGGTGA TGTGGTGACC
GCCGGTGGCG AGTTGTTCAA GCTGATCCGA CAAAATCGTA TCGAATGGAA AGCGGAATTG
CCATTTAATC GGCTGGCTGA CGTCAAGGTC GGAACAAAAG CTGTCATCCC AACGCCGCGC
GGCGACGTGC ACGGTGAGGT CAGGATGGTG GCACCTTCGA TGTCAACCGA CAATGGTCGC
GTGATCGTCT ACGTGACGCT GAATCCCACT CCAGGGATGG ATGCCCCAAA GATCGGCATC
CTGGCCAGCG GCTACTTTGA ATTCAACAAC ACGGATGCGC TCACAGTGCC CGCTGCTGCC
GTCACCCTCA AGGACGGCTT CTCATATGTG TTCATTTTGA ACTCGGCAGA CAAAAAAACG
GTGACACGCA AGCGGGTAAA GCCTGGACGG CGGCAGGACG ATCGTGTTGA AATCATTTCA
GGAATTGAGA AGACTGACGA CGTTGTTGCG TCAGGCGGCG TCTTCCTTGC AGATGGCTCT
GTAGTCCATG TTGTCGACAG CAATGATGCG GCAACGACGG AGGAATCGAA GTGA
|
|---|
| Protein sequence | MMRKFSTRSL ATVLALGSFF MVAFAARSQD GEQKTDQAAA LSVSLVKPAV LLWPVIIPAS
GRLAAWHEAT IAAETSGMKV TEVKADVGAH VKKGDLLVQF APESAQADLE QQQANVEKAE
ADLDQAIANG DRARGLTSSG ALSSQQIKEY LITERKAKAS LFSAKAALAS SQLTLDRTKV
YAVDDGVISE RSASLGDVVT AGGELFKLIR QNRIEWKAEL PFNRLADVKV GTKAVIPTPR
GDVHGEVRMV APSMSTDNGR VIVYVTLNPT PGMDAPKIGI LASGYFEFNN TDALTVPAAA
VTLKDGFSYV FILNSADKKT VTRKRVKPGR RQDDRVEIIS GIEKTDDVVA SGGVFLADGS
VVHVVDSNDA ATTEESK
|
|---|
| |