| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7061 |
|---|
| Symbol | traG |
|---|
| ID | 7380121 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | - |
|---|
| Start bp | 53348 |
|---|
| End bp | 55315 |
|---|
| Gene Length | 1968 bp |
|---|
| Protein Length | 655 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643641200 |
|---|
| Product | conjugal transfer coupling protein TraG |
|---|
| Protein accession | YP_002539497 |
|---|
| Protein GI | 222102458 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | [TIGR02767] Ti-type conjugative transfer system protien TraG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.920891 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGTGA ATAGGCTTTT GCTGTTCGTT CTGCTGGCGG CAATCATGCT TGCCGCGTTG
GTAATGACAT CCGGAATGGA ACATCGGCTG GCGGAGTTCG GCTCCTCGAC CCAGGCGAAG
CTGATGCTAG GACGAACTGG CCTTGCCCTG CCCTACATCG CCGTCGCCGC AATTGGTGCC
ATAGCATTGT TTGCAGCAAA TGGATCAGCC AACATCAAGA CGGCAGGTGT GAGCGTCCTA
GCCGCAAACA GTACGGCGAT CATTATCGCG ACCATAGGCG AGACGATCCG TCTGACCGGC
ATCGCGGGCA ACGTACCGGC AGGACAATCG GTTCTCACCT ATGCCGATCC AGCGACAATG
GTCGGTGCGG GCGTCGCATT CGTCAGTGCA ATGTTTGCGC TGCGCGTCGC GATCAAGGGC
AATGCCGCTT TTGCTCAAAC CGGACCTAAG CGGATCGGCG GAAAGCGAGC GGTGCATGGC
GAAGCCGACT GGATGAAGTT GCAGGAGGCG GCAAAGCTCT TTCCCGAACC CGGCGGCATC
GTTATTGGCG AGCGATATAG AGTCGACAAG GACAGCGTGG CCACCATGCC TTTTCGGGCC
GATGAGCCAC AGAGCTGGGG TGCGGGCGGC AAGTCGCAGC TGCTCTGCTT CGATGGGTCG
TTTGGCTCCT CGCACGGCAT CGTTTTTGCG GGCTCCGGCG GTTTCAAGAC GACGTCGGTG
ACGATCCCAA CAGCGCTCAA ATGGGGTGGC GGGCTGGTTG TGCTTGATCC ATCAAGCGAG
GTCGCACCGA TGGTCGTCGA TCACAGACGC AAGGCTGGGC AGAAGGTGAT TGTGCTGGAT
CCCACCCGAC AGGGAGTGGG CTTCAACGCG CTCGACTGGA TCGGCCGTCA CGGCAATACG
AAGGAAGAAG ATATTGTCGC CGTGGCCACC TGGATCATGA CAGACAATGC GCGCACCGCG
TCCGCCCGCG ACGACTTCTT TCGGGCCTCG GCCATGCAGC TTCTGACGGC CCTCATCGCC
GACGTTTGTC TTTCCGGCCA CACCGACGCG AAGAACCAGA CACTACGCCG TGTCCGGGCC
AATCTCTCCG AACCGGAGCC CAAGCTGCGG GGACGTTTGA CCGAGATTTA TGAACAGTCG
GAATCCGACT TCGTGAAAGA GAACGTCGCT GTCTTCGTCA ACATGACGCC GGAGACGTTT
TCCGGTGTCT ATGCAAACGC CGTGAAGGAA ACACATTGGC TATCCTACCC GAACTATGCT
GGCCTCGTAT CTGGTGACAG TTTTTCGACC GACGATCTAG CCAACGGTGG AACGGATATC
TTCATTGCAC TCGATCTGAA GGTGCTGGAA GCCCATCCAG GCCTGGCACG CGTCGTCATC
GGCTCGCTGC TCAACGCCAT TTACAATCGC AACGGTGATG TGAAGGGACG CACGCTCTTC
CTGCTCGATG AGGTCGCCCG GCTCGGATAC CTGCGTATCC TAGAAACCGC ACGCGATGCC
GGGCGCAAAT ACGGCATCAC GCTGACGCTG ATCTTCCAGT CGCTGGGCCA GATGCGCGAG
GCTTATGGGG GTCGGGACGC GACGTCCAAA TGGTTCGAGT CCGCATCCTG GATATCATTT
GCGGCGATCA ACGATCCTGA TACCGCAGAT TATATCTCGA AACGTTGTGG TGACACCACG
GTTGAGGTCG ACCAAACCAA TCGCTCCTCC GGCATGAAGG GATCGTCACG GTCGCGATCA
AAACAGCTCA GCCGCCGGCC ACTGATCATG CCGCATGAGG TTCTGCGCAT GCGCAGCGAC
GAGCAAATCG TCTTTACTGC TGGCAATGCA CCGCTACGCT GCGGACGCGC CATCTGGTTT
CGACGCGAAG ACATGAAAGC CTGCGTCGGA GAGAATAGGT TCCATCACCC CCATACGACA
ACAACCTCCA TTGCCGCACC CAAAGTGACG AAGTCGGATG AAGACTGA
|
|---|
| Protein sequence | MTVNRLLLFV LLAAIMLAAL VMTSGMEHRL AEFGSSTQAK LMLGRTGLAL PYIAVAAIGA
IALFAANGSA NIKTAGVSVL AANSTAIIIA TIGETIRLTG IAGNVPAGQS VLTYADPATM
VGAGVAFVSA MFALRVAIKG NAAFAQTGPK RIGGKRAVHG EADWMKLQEA AKLFPEPGGI
VIGERYRVDK DSVATMPFRA DEPQSWGAGG KSQLLCFDGS FGSSHGIVFA GSGGFKTTSV
TIPTALKWGG GLVVLDPSSE VAPMVVDHRR KAGQKVIVLD PTRQGVGFNA LDWIGRHGNT
KEEDIVAVAT WIMTDNARTA SARDDFFRAS AMQLLTALIA DVCLSGHTDA KNQTLRRVRA
NLSEPEPKLR GRLTEIYEQS ESDFVKENVA VFVNMTPETF SGVYANAVKE THWLSYPNYA
GLVSGDSFST DDLANGGTDI FIALDLKVLE AHPGLARVVI GSLLNAIYNR NGDVKGRTLF
LLDEVARLGY LRILETARDA GRKYGITLTL IFQSLGQMRE AYGGRDATSK WFESASWISF
AAINDPDTAD YISKRCGDTT VEVDQTNRSS GMKGSSRSRS KQLSRRPLIM PHEVLRMRSD
EQIVFTAGNA PLRCGRAIWF RREDMKACVG ENRFHHPHTT TTSIAAPKVT KSDED
|
|---|
| |