| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7002 |
|---|
| Symbol | repC |
|---|
| ID | 7380205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | + |
|---|
| Start bp | 2470 |
|---|
| End bp | 3684 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 643641157 |
|---|
| Product | replication initiation protein RepC |
|---|
| Protein accession | YP_002539454 |
|---|
| Protein GI | 222102415 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGACTG GAAATGTAAC GACGCCCTTC GGGCGGCGGG GTATGACGCT TGCGCTGGTG
CGTCGGCAGG TCGCCACAAG CGACATTAAG CCGGGCAAAC GTGCGGATAA ATGGAAAATA
TTCAGGGATG CTTCAGCCGC AATGGACTTG CTTGGGATAC AATCCAACAG TCTTGCGGTT
CTCGATGCCT TATTGAGCTT TTATCCGGAG AATGAGCTGC GGCAGGATGC ACAGCTTGTT
GTTTTTCCCT CAAATGCTCA ACTTGCTCTT CGGGCGCACG GTTTGGCCGG GGCGACTTTA
CGCCGGCATA TTGCCGTGCT TGTCGATGCA GGCCTGATCG TTCGTAAAGA TAGCGCCAAT
GGAAAACGCT ACGCGCGTAA GGATAATGCC GGTCAAATCG AGGAGGCATT TGGCTTCGAT
TTATCACCCC TTCTCGCGCG CTCAGAGGAG CTTGCGATTA TGGCGCAACA GGTGATGGCT
GATCGCGCCA CCTTTAGAAA AGCCAAGGAA AGCCTTACCA TTTGCCGCCG AGATGTCCGC
AAGCTGATCA CGGCTGCGAT CGAGGAGGGC GCGCAAGGTG ACTGGCACGA GATCGAATGC
GCTTATATCT CTCTCGTCGG CAAAATATCC AGAACCCCAG CTCTTTCTGA GGTCGCATTG
GTTTTAGATG AGATGAATAG TCTTAAGAGA GACATCATTA AGCGACTGGA AAATCAGGTT
AATTCAGAAA AAAATAGCGC CAATGCCGCT CAAATTGAGC GGCACATACA GAATTCAAAA
ACCAACTACA TAACTGAATT TGAACCTCGC TCTCGAAAAG AGCAAGAAGC GACTGAGGAG
CAAAACAATC CGCCTAAAAG ACTGCCGATA AAGTCATTTC CGCTTGGAAT GGTTTTGAAG
GCTTGCCCCT CGGTTTGCGA TTACGGACCA GATGGAAAGA TCGCAAATTG GCGTGACTTA
ATGACAGCTG CGGTGGTGGT TCGATCTATG TTGGGAGTAA GTCCGTCCGC CTATCAGGAA
GCCTGCGAAA TCATGGGGCA AGAGAATGCG GCAACCGCCA TTGCATGTAT TTTAGAGCGT
GCAAATTTTA TCAATTCGGC AGGAGGTTAT CTGCGCGATC TAACCCGTCG GTCACAGCAG
GGAGAATTTT CTCTAGGGCC TATGATGATG GCTTTGTTAA GGACCAACGG AGAAGCGGGT
ATGAAGACCG GGTAA
|
|---|
| Protein sequence | METGNVTTPF GRRGMTLALV RRQVATSDIK PGKRADKWKI FRDASAAMDL LGIQSNSLAV
LDALLSFYPE NELRQDAQLV VFPSNAQLAL RAHGLAGATL RRHIAVLVDA GLIVRKDSAN
GKRYARKDNA GQIEEAFGFD LSPLLARSEE LAIMAQQVMA DRATFRKAKE SLTICRRDVR
KLITAAIEEG AQGDWHEIEC AYISLVGKIS RTPALSEVAL VLDEMNSLKR DIIKRLENQV
NSEKNSANAA QIERHIQNSK TNYITEFEPR SRKEQEATEE QNNPPKRLPI KSFPLGMVLK
ACPSVCDYGP DGKIANWRDL MTAAVVVRSM LGVSPSAYQE ACEIMGQENA ATAIACILER
ANFINSAGGY LRDLTRRSQQ GEFSLGPMMM ALLRTNGEAG MKTG
|
|---|
| |