Gene Avi_6284 details

Gene Information

• Locus tag: Avi_6284
• Symbol: attE
• ID: 7381147
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 1276745
• End bp: 1277401
• Gene Length: 657 bp
• Protein Length: 218 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643649744
• Product: ABC transporter nucleotide binding/ATPase protein
• Protein accession: YP_002547968
• Protein GI: 222107177
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTGCTGG TACTGGATGC CGTAAAAAAA ACATACCGCA CATCGGAAGG TCCTTTGGAG 
GTTCTCAAAG GTGTCAGCTT GACCCTGGCC GCAGGGCGAA CCATGGCATT GACCGGGGAA 
TCTGGCAGCG GAAAAAGTAC ATTGCTTCAT CTGGCGGGCG GGCTGGACAG CGCCGATGCC 
GGGAAGCTTT GCGTGGATGG GGAAGATATC GATGCGCTCG ATGATAAAGG TCGCGCCCGG 
TTGCGGCGTG GCACAGTCGG GTTGATTTTT CAGCAGTTCA ACCTGATCCC CTCGCTGGAT 
GTGCGGGCCA ATCTGGCCTT TCATGCCCGG CTGGGTGAGC GTTACGATGG GCAATGGCAG 
ACGGAATTGA CGGAACGCCT TGGGCTTGCG GCGCTTCTGT CGCGCTATCC CGAGCAGCTC 
TCCGGCGGCC AGCAACAGCG CGTCGCCATC GGTCGGACAC TTGCTGTCCG GCCAAAACTG 
GTTCTGGCCG ATGAGCCGAC GGGAAATCTC GACGAAGAGA CGGGCAATGC GGTCATGGCT 
TTGATGTTAT CTCTGGTGCG GGAGACGGGT GCGGCCCTGT TGATGGTGAC ACATTCACCC 
CGATTGGCTG CCATGCTGGA TGAAAACTTG CATTTGCGTG CCGGGCGGGT GGCCTGA 

 

Protein sequence

MVLVLDAVKK TYRTSEGPLE VLKGVSLTLA AGRTMALTGE SGSGKSTLLH LAGGLDSADA 
GKLCVDGEDI DALDDKGRAR LRRGTVGLIF QQFNLIPSLD VRANLAFHAR LGERYDGQWQ 
TELTERLGLA ALLSRYPEQL SGGQQQRVAI GRTLAVRPKL VLADEPTGNL DEETGNAVMA 
LMLSLVRETG AALLMVTHSP RLAAMLDENL HLRAGRVA