| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6053 |
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| Symbol | clpB |
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| ID | 7380879 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 1072987 |
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| End bp | 1075698 |
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| Gene Length | 2712 bp |
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| Protein Length | 903 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649556 |
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| Product | ATP-dependent Clp protease ATP-binding subunit |
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| Protein accession | YP_002547781 |
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| Protein GI | 222106990 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR03345] type VI secretion ATPase, ClpV1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGCATA TTGACCTCAA TCGATTGATC GAATCGCTTG AGCCTAATTT GCGTGTCGCG
CTTGAGACGG CTGCATCCAC AGCAGCCGGG CGCGGACACG GACAGGTTGA TATTGCTCAT
CTGCTTGCCG CCGTCATGGA TGCGGCGTCG TTTCAACCTG TGTTGGAACA ATTGGGCTTG
CCCATTGCAG CACTTCGCCG CGAAGTGAGC GATGCGCTCG ATGACACCGT GGTGTCCGGA
TCCGGTCAGC TCGCTTTATC CCAGAATATT CTGACTTTGG GTCGTGAAGC CTGGATTTGT
GCTTCGCTCC AGTCTGGAAG ACGTGCGATT ACGCTTGCCG ATATATTTGC GGCTATGGAT
GATGAGCCGT CGCTTCGGGC CTTGACCCGT GGTCGTTTCC CGTCGCTGAG GATGCTGGAC
CGAACAGCAC TCGAAACACT TTTGCAGACA GACGTTGTCG CCGAGACGCC AAAATCGTCG
CTGTCTCCGG CCTCAGTCCG GGAAGACGAG TTCCTGCGAC TTTACACTCA TGACCTTACC
GAGGATGCGC GGGCGGGCCG GCTTGATCCT GTCGTCGGCC GTGATGGCGA ACTTCGCCAG
ATGATCGACA TTTTGTTGCG CCGGCGACAG AATAACCCGA TCCTGGTCGG TGAAGCGGGC
GTTGGCAAGA CAGCGGTGGC CGAAGCGCTG GCGCTGGAGA TTGCCGCCGG ACGCGTGCCG
GAAAAATTGC AATCCGTACG GCTTCTGATG CTCGATCTGA CTCTGTTGCA GGCAGGCGCT
GGCGTGAAGG GTGAGTTCGA ACGGCGGTTG ACCGGCGTTA TCGAAGCGGT GAAACGTTCG
CCGGAACCTA TCATCCTGTT TATCGATGAA GCGCATGGAC TGATCGGTGC CGGTGGGGCA
AGCGGGCAGG GCGATGCCGC CAATATTCTC AAGCCCGCGC TAGCGCGGGG TGAAGTGCGG
ACAATCGCTG CCACGACTTG GAGCGAGTAC AAGAAGTATT TCGAAAAAGA CGCAGCGCTT
ACCCGCCGCT TCCAACCCGT GCATGTGCGT GAGCCGGACG AGGAAACCGC GATCCGCATG
TTACGCGGAA TAGCTGAGAC CTTCATGGCC CATCATGGGG TAAAGATCCG TGACGAGGCT
ATCGTCGCTG CCGTGCAACT TTCTGCCCGC TTTCTTCCAG CCCGCCAATT GCCTGATAAG
GCGGTCAGCC TGATCGATAC CGCCGCAGCC ACGGTTTCGC TGGCGCGCCA GACGGTGCCG
GAACAATTAC TGCTTCTTAA AAGCGAGCTT GCGCATCTCA CGGTCGAGAC CGACTGGCTT
GCCCGTGAGC CAGAAAATAC GGATGTGCAG GAGCGCCGCC AGGCCGTGAC CACTGAAATG
GAGCGCCTGG CTAAGGAAAT CGATAGCCTC CAAGCGCGCT ATGATGCTGA AATTGCAGCG
CTGGCAGCGA GTGACGAAGC GCCCGCCGTA GACAGTGATA AGATGGCGTC GAAGGATGCT
CCTGATGTTA ACGTCACACC ATTGATCACT CCTCTGCGGA CACGGGGGCT TGTCCGCCGC
GCGGCGTCTC TGGCGCCGAC CTCCGCTGGC GAAGAAAAGC TTGTACCGCA TGAGGTCGAT
CGCAATGTTG TTGCCGCCGT CCTGGCGCGG TGGACCGGCA TTCCTCTGGG CAAACTGCTG
GCCGACCAGA TTGAAAGCGC AAAAAGCCTC GATATGAGGT TGAAGGAAAA GGTAATCGGC
CAGGATGCCG CACTGGAACG GATCGGTGAC GCCATGCGTG CGGCGCGCGC CGGGCTTTCC
GATCCACGTC GTCCGCCTGC CGTGTTCATG CTGGTCGGCA TGTCGGGAAC CGGTAAAACC
GAAACCGCGC TGACCCTGGC TGATCTGATG TATGGTGGTA GCCAACATCT GACGACGATC
AACATGTCGG AGTTCAAGGA AGAGCACAAA GTATCCATGC TGCTGGGTGC TCCTCCAGGC
TATGTCGGCT ATGGCGAAGG CGGCGTGCTG ACCGAAGCCG TGCGGCGTCG GCCCTATGGC
GTGCTGTTGC TCGACGAAAT CGACAAGGCG CATCCCGGTG TCCAGGACAT TTTCTATCAG
GTCTTCGACA AGGGAATGTT GCGCGATGGC GAAGGCCGCG ATGTTGACTT CCGCAATACC
ACGATTTTCA TGACGGCCAA TACCGGCTCG GAATTGCTGG CCTCCTTGGC CCTTGATCCA
GACACCATGC CCGAAGGTGA GGCGTTGGAA GCATTGTTGA TGCCGGAACT GCAAAAGCAG
TTCAAGCCGG CCTTCCTCGG ACGCACGCTG CTGTTGCCGT TCATGCCGCT TGGCAAGGAG
GCCCTGTCGC GGATCGTCGA TATCCAGATC AACCGCATTC GGGAGCGTAT TTTTTCGGCC
TATGGCACAG AGCTTGCTCT GTCCGAAGAG GCCCGCAATG CGCTGGTCGG ACGCGCTGTT
GCAAGTGAGA TCGGAGCTCG TGCCATCGAA ATCATGATTG GCCGGGATCT GTTGCCGCCG
CTTTCCAGCT TCTTCCTTGA GCTGGTCGCA TCTGGCGCAA AGGTTACCGA AGCTCTGGTA
ACCCATGATG AAAAAGGGTT CGGCGTTCGC GCCGGGGCCG CTGGGGAAAA AGAGGAATTC
GCCGATGCCT CGGGTGCATC GGTGGATAAG GATGCCGCGT CGGAAGGGGT ATCCAGACGC
ATGCGGCAGT GA
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| Protein sequence | MSHIDLNRLI ESLEPNLRVA LETAASTAAG RGHGQVDIAH LLAAVMDAAS FQPVLEQLGL
PIAALRREVS DALDDTVVSG SGQLALSQNI LTLGREAWIC ASLQSGRRAI TLADIFAAMD
DEPSLRALTR GRFPSLRMLD RTALETLLQT DVVAETPKSS LSPASVREDE FLRLYTHDLT
EDARAGRLDP VVGRDGELRQ MIDILLRRRQ NNPILVGEAG VGKTAVAEAL ALEIAAGRVP
EKLQSVRLLM LDLTLLQAGA GVKGEFERRL TGVIEAVKRS PEPIILFIDE AHGLIGAGGA
SGQGDAANIL KPALARGEVR TIAATTWSEY KKYFEKDAAL TRRFQPVHVR EPDEETAIRM
LRGIAETFMA HHGVKIRDEA IVAAVQLSAR FLPARQLPDK AVSLIDTAAA TVSLARQTVP
EQLLLLKSEL AHLTVETDWL AREPENTDVQ ERRQAVTTEM ERLAKEIDSL QARYDAEIAA
LAASDEAPAV DSDKMASKDA PDVNVTPLIT PLRTRGLVRR AASLAPTSAG EEKLVPHEVD
RNVVAAVLAR WTGIPLGKLL ADQIESAKSL DMRLKEKVIG QDAALERIGD AMRAARAGLS
DPRRPPAVFM LVGMSGTGKT ETALTLADLM YGGSQHLTTI NMSEFKEEHK VSMLLGAPPG
YVGYGEGGVL TEAVRRRPYG VLLLDEIDKA HPGVQDIFYQ VFDKGMLRDG EGRDVDFRNT
TIFMTANTGS ELLASLALDP DTMPEGEALE ALLMPELQKQ FKPAFLGRTL LLPFMPLGKE
ALSRIVDIQI NRIRERIFSA YGTELALSEE ARNALVGRAV ASEIGARAIE IMIGRDLLPP
LSSFFLELVA SGAKVTEALV THDEKGFGVR AGAAGEKEEF ADASGASVDK DAASEGVSRR
MRQ
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