Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5344 |
Symbol | dapE |
ID | 7380702 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | - |
Start bp | 344389 |
End bp | 345795 |
Gene Length | 1407 bp |
Protein Length | 468 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643648963 |
Product | hypothetical protein |
Protein accession | YP_002547200 |
Protein GI | 222106409 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACCGATC TTGAAACCGT CCTCGCCCAT GTCGATGACA ATCTGCCCTC CAGTCTGGAA ACACTGTTCG ATCTGGTGCG TATCCCCTCG ATTTCCACCG ATCCGGCCTA CAGCCCGCAT TGCCGCAAGG CTGCGGATTT CCTGGCGACC TATCTGAGCG GACTGGGCTT TGCCGCATCG GTGCGCGACA CGTCAGGTCA TCCGATGGTG GTTGCGCATC ACGAGGGCCA AACCGCGGAT TGCCCGCATG TGCTCTTTTA CGGCCATTAC GATGTTCAGC CGGTGGACCC GCTGAACTTA TGGCAAAACG ACCCGTTCGA CCCAGCTATT CGTGACGGTT CAACCGGAGA AAAGATCATC ACCGGACGCG GTACTTCGGA TGACAAGGGA CAGCTCCTGA CCTTCATCGA GGCTCTACGC GCCTTCAAGG AAACCAAGGG CGGACTGCCG GTGCGTGTGA CCATTCTCTT CGAAGGCGAG GAGGAATCGG GATCGCCGTC GCTTCAGCCT TTTCTCGAAG CCCATGCTCA GGAGTTGAAG GCTGATTTTG CCATGGTCTG CGACACCGGC ATGTGGGACA CGCAAACACC GGCGATCTGC GCCAGCCTGC GCGGTCTGGT TGGCGAGGAA ATCACCATCA AGGCCGCCAG CCGTGACCTC CATTCGGGCG GATATGGTGG CGTCGCAGCC AATCCGTTGC ATGTCCTGAG CGATATCATG GCTGGCCTGC ATGATCAAAC CGGTGCCGTG ACCCTGCCCG GCTTTTATGA TGGCGTCGAG GAAACACCGC CCGATATCAA GGCCGTCTGG GCGGATCTGG AGAAGACCCA ACCCGCGTTC CTGACCGATA TCGGCCTGTC CGTCCCGTCA GGCGAAAAAG GCCGTAGCGT TCTGGAATTG CTCTGGGCGC GCCCGACCGC CGAGATCAAC GGCATGTCCG GCGGCTATAC CGGCAAGGGC TTCAAGACCG TAATTGCCGC CGAGGCGATG GCCAAGGTAT CCTTCCGTCT GGTGGGAAAA CAGGACCCGC AAAAAATCCG CGACAGCTTT CGCGCCTATG TAACCTCAAA ATTACCTAGT GATTGCCGGG TTGAATTTCA GGCCGAAGGG GCCTCACCTG CCATTCAATT GCCCTATGAC TCGCCAATCC TCGCCACGGC CAAGGCGGCT CTTTCACAGG AATGGCCAAA GCCGGCCATT GTTGTCGGCG GCGGCGGATC AATCCCGATT GTCGGCAGCT TTCAGTCCAT GCTCGGCATG GACTCCTTGT TAGTAGGCTT TTCGCTGGAC GATGACTGCG TTCACTCGCC CAATGAAAAA TACAACCTCA CCTCTTTTCA CAAGGGCACC CGATCCTGGG TGCGGATCTT GCACGGCCTG AGCGACGAGG CGATCAACAG GCTGTAA
|
Protein sequence | MTDLETVLAH VDDNLPSSLE TLFDLVRIPS ISTDPAYSPH CRKAADFLAT YLSGLGFAAS VRDTSGHPMV VAHHEGQTAD CPHVLFYGHY DVQPVDPLNL WQNDPFDPAI RDGSTGEKII TGRGTSDDKG QLLTFIEALR AFKETKGGLP VRVTILFEGE EESGSPSLQP FLEAHAQELK ADFAMVCDTG MWDTQTPAIC ASLRGLVGEE ITIKAASRDL HSGGYGGVAA NPLHVLSDIM AGLHDQTGAV TLPGFYDGVE ETPPDIKAVW ADLEKTQPAF LTDIGLSVPS GEKGRSVLEL LWARPTAEIN GMSGGYTGKG FKTVIAAEAM AKVSFRLVGK QDPQKIRDSF RAYVTSKLPS DCRVEFQAEG ASPAIQLPYD SPILATAKAA LSQEWPKPAI VVGGGGSIPI VGSFQSMLGM DSLLVGFSLD DDCVHSPNEK YNLTSFHKGT RSWVRILHGL SDEAINRL
|
| |