| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5301 |
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| Symbol | |
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| ID | 7380667 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 304280 |
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| End bp | 305170 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643648929 |
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| Product | ABC transporter membrane spanning protein (oligopeptide) |
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| Protein accession | YP_002547166 |
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| Protein GI | 222106375 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.527833 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCATTG CTATTCCGTC TCCGGTCCCG CCCGCGCGGC CTTCGCGCTG GTGGCGGAGC
CGCGTCGCAC GCCGGTTCTT CCGTCACAAA CTCGCCCTTG TCGGCCTGGT GATGATCACG
CTGTTGGTCT TTGCCTGTGT GGCTGGTCCC TCTCTTTTGC CCTATGACGA GTTGTTTATC
GATCTGCGCG CCCGCTTTGC GCCGCCCCTG ACTGGCGCCC ACATCTTCGG CACCGATCCG
CTGGGGCGTG ACATCGCCGC AAGGTTGTTC AATGCCGGGC GTATTTCGCT GTTGATTGGT
TTCTTCGCCA TGCTGATGTC CACCGCTATC GGTGCCGTCG TTGGCGTTGT CGCGGGATAT
CGCGGCGGAT TGATTGGCAC GGTGCTGATG CGCTTCGTCG ATGCCTTCCT GTCCTTTCCG
TCGATCTTTC TGCTGCTGGC ACTTGCCGCC TTTATCAGGC CAAGCCCGTT GATGATCACG
GTCATCATCG CGGTGACATG CTGGATGGAA GTCGCCCGGA TTGTGGAAGC GGAGGTGCGT
TCGCTGCGCG AGCGCGATTT CGTTATGGCC GCCCGAATGC TGGGGCTGCG CAACAGCCAT
ATCATGATCC ACGAACTCCT GCCCAATGCG GTCGGTCCGA TCATCGTTGC CGCTACGCTG
ACGGTGGCCC GCGCCATCCT GCTCGAAGCC TATGTCAGCT TCCTCGGCTA TGGTATCCAG
CCACCCTTGC CGAGCTGGGG TAATATGCTC AACAGTGCGC AGCAATATCT GGGAAGTGCG
CCTTGGCTCG CCATCGTGCC GGGTGTCGCC ATCACGCTTG CCGTCACCAG CTTCAACTTC
ATTGGCGATG GTTTGCGTGA TGCGCTCGAC GCGCGCAGCG ATAACCCATG A
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| Protein sequence | MSIAIPSPVP PARPSRWWRS RVARRFFRHK LALVGLVMIT LLVFACVAGP SLLPYDELFI
DLRARFAPPL TGAHIFGTDP LGRDIAARLF NAGRISLLIG FFAMLMSTAI GAVVGVVAGY
RGGLIGTVLM RFVDAFLSFP SIFLLLALAA FIRPSPLMIT VIIAVTCWME VARIVEAEVR
SLRERDFVMA ARMLGLRNSH IMIHELLPNA VGPIIVAATL TVARAILLEA YVSFLGYGIQ
PPLPSWGNML NSAQQYLGSA PWLAIVPGVA ITLAVTSFNF IGDGLRDALD ARSDNP
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