Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_4065 |
Symbol | agrR |
ID | 7388870 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 3420496 |
End bp | 3421251 |
Gene Length | 756 bp |
Protein Length | 251 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643652778 |
Product | transcriptional regulator LuxR family |
Protein accession | YP_002550951 |
Protein GI | 222149994 |
COG category | [K] Transcription |
COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGTTTA ATGCAGACAT GTCGAGCGGC AGGACAGGAT CGGCGGCAGA TCTGAAAGCC CGGCTGGCTG CGAACCGGGG CGATATTTTT CCTCGGCTGA TTGCCATGCA GAAGGCGATC AACGCCCGCA GCTTCGCGGT GTTTCGGGTG GCGGGTTCAG GCCTGCCGCG CAAACGCATG TTGCAATGCG AATGTGAGAG CTGGGCGGCT AGCGGCATGG TCGGCAGCTA TAGCGACGCA TTTGTGTCCT GCTACGGCGA CCTTCTGCTG AGCCATATCG ACGATTTGCT GCTGCCTTTG ATGTGGAATG CCAAGGACAA CGCCACATTC TGTATTAGCA GTGAGTTTGG GGCTTTCGTA TCGCGCCTGC CTGCTGGCAA TCTGCCGTTT TCGGGTGTTG CCTTTCCTGT CCGGCTGGGC GCTGTCGGCA ATGGCTATGT CATCTTCGCA TTAAACGGAT CTGAGGATCT CGATAGCGAT GTGATGATCG ACATGCATAA TCGCAGCTGC AAGCTGATGA TGGATATTCT ATCCCTGAGC GAGCGAAAAG TAGCGCCCTC CGAGGCGTTG AGCGACCGGG AAATCGCCTG CCTGCAATTG GCGGGCGACG GGCGGATCAG CGAAGAAATT GCCGAAAATC TCGGCCTCTC GGTCCATACC GTCAATGCTT ACCTGGGCTC GGCGACGATC AAGCTTGATT CGGTCAACCG TATACAGGCA ATCGCCAAGG CTATCAGGCT CGGCTATATC AACTGA
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Protein sequence | MAFNADMSSG RTGSAADLKA RLAANRGDIF PRLIAMQKAI NARSFAVFRV AGSGLPRKRM LQCECESWAA SGMVGSYSDA FVSCYGDLLL SHIDDLLLPL MWNAKDNATF CISSEFGAFV SRLPAGNLPF SGVAFPVRLG AVGNGYVIFA LNGSEDLDSD VMIDMHNRSC KLMMDILSLS ERKVAPSEAL SDREIACLQL AGDGRISEEI AENLGLSVHT VNAYLGSATI KLDSVNRIQA IAKAIRLGYI N
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