| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3864 |
|---|
| Symbol | |
|---|
| ID | 7388547 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 3212981 |
|---|
| End bp | 3214183 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643652614 |
|---|
| Product | glycosyltransferase protein |
|---|
| Protein accession | YP_002550795 |
|---|
| Protein GI | 222149838 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.431129 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCCAGA CGCCCAGACG GCCCGTGATT ATCCATTGGG GCATATCCAG CTTTTTCGGC
TGGGGCATTT ACGGCCTCAA CCTGGCGCTC AACTGGTCCA CCGATCCGCA GCTGGAGCCG
GTCACATCCT TTCCGTTGCA ATCCGACCAG ATCGTCGTCG ATCCGTTGCG CCAGCGCGCA
CTTGGCGGAT TTTTCCGGGC CAGCGCCGAC CTTTCGAACC GCATCGCCGC CCAGAGCGAA
AAGTCCCTGA CGGTCAATAC CCCGCTTCTC GCCGGGCTGG GCAATGATTT CACCATGTCG
CCCGGCCCCA AAGGCGTTGC CCTTTCCGGC AGTCCGACGC TGGGCGTGGT GTTCTTCGAA
CTACCGCAAC TGTCGGAGGC CACGAAAGCC AGAGCCAAAG CATTGCCGCT GGTGATTGCC
GGATCGAGCT GGAATGAAGA GATCATGCGC GCCCATGGCC TCAACAATGT TACCACCGTC
ATCCAAGGCA TCGATCAGAC ACTGTTTCAC CCCGGCCCGC GCCAAGGCGT TCTGGCCGAC
CGGTTCCTGG TGTTTTCAGG CGGCAAGCTG GAATTGCGCA AAGGGCAGGA TCTGGTGGTG
GCAGCCTTCG CAAGGTTTGC CAAACGCCAT CCCGAAGCCC TCTTGGTTTC CGCATGGCAC
AGTCCATGGC CGCAATTTGC CCTGACGCTC AACCGGTCCG GCAAGGCCAC CGCCATCACC
ACCAATGACA AGGGCGCCAT CGATCAATCC GCCTGGATTG CCGCCAACGA TATCGCTGCC
CATCAATTCC TCGATCTCGG CTCCGTACCA AACGCGCTGA TGGCGCCGAT CCTGCGCGAA
ATGGACGTCG CGGTCTTCCC CAACCGCTCC GAAGGCGGCA CCAATCTGGT GGCGATGGAA
TGCATGGCCT GTGGCGTGCC GACGATTCTG TCGGCCAATA CCGGTCATCT CGACCTGATC
GACGGCGGCA ATTGCTATGC GCTGGAACAT CAGACCCCCG TTGCAGGCGA AGGCGCTGGT
GTCGGCTCCG TGGCCGGGTG GGGAGAAAGC AGCGTCGATG AAATCGAAGA GGCGCTGGAG
CGGGTCTGGC GCGACCGCAA CGAAGCCCGT CGCCGTGGCG AGCGCGGCGC GGCGAAACTG
GCTGGCTATA CCTGGTCGCG CACGGCGGAT GCGATGAAAA AGATTATCAG GACCTATCAG
TAA
|
|---|
| Protein sequence | MTQTPRRPVI IHWGISSFFG WGIYGLNLAL NWSTDPQLEP VTSFPLQSDQ IVVDPLRQRA
LGGFFRASAD LSNRIAAQSE KSLTVNTPLL AGLGNDFTMS PGPKGVALSG SPTLGVVFFE
LPQLSEATKA RAKALPLVIA GSSWNEEIMR AHGLNNVTTV IQGIDQTLFH PGPRQGVLAD
RFLVFSGGKL ELRKGQDLVV AAFARFAKRH PEALLVSAWH SPWPQFALTL NRSGKATAIT
TNDKGAIDQS AWIAANDIAA HQFLDLGSVP NALMAPILRE MDVAVFPNRS EGGTNLVAME
CMACGVPTIL SANTGHLDLI DGGNCYALEH QTPVAGEGAG VGSVAGWGES SVDEIEEALE
RVWRDRNEAR RRGERGAAKL AGYTWSRTAD AMKKIIRTYQ
|
|---|
| |