Gene Avi_3546 details

Gene Information

• Locus tag: Avi_3546
• Symbol: prp1
• ID: 7388811
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 2941425
• End bp: 2942204
• Gene Length: 780 bp
• Protein Length: 259 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643652379
• Product: serine/threonine protein phosphatase I
• Protein accession: YP_002550562
• Protein GI: 222149605

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATAAAGT TGTTGCGTAA ATTTCTCGAC GTCGGATCGG AAACCGGTGT GGCTGGCATG 
CGTAGTCGTG TGGATATCGA TCCCAAGGCG TTTTCCGCGA TCTATGCGGT GGGGGATGTG 
CATGGTTGCT ATGCTGAGTT GCTGGAAGCG GAATGCCGTA TCCTGCACGA TGCCGGCAGT 
ATCGATGGTC CCAAGCTGAT TGTCATGCTG GGTGACTATG TCGATCGTGG GCCGTCCTCG 
CGCCGGGTGA TCGACCACCT GATGGCACCG CTGGCACCCG GTTTCGAGCG GGTATCGCTG 
TGCGGCAATC ATGACGATGT GTTCTGCCAT TTTCTCGACG ATCCTTCGGC TGGACGGCGC 
TGGCTGGATT TCGGCGCGGC GGCCACGCTT TATTCCTATG GCATCGATAT CGATCATGCC 
TTGCACCAGG CCGGCAGTTT CAAGGGGCTC TCTTCGGAAC TGGCACGGGC CATTCCTGAA 
AGCCATTATG CCTGGCTGAA ATCCCTACCG GTCATGCTCA AGGTCGGGCA ATTTCTGTTC 
GTGCATGCAG GCCTGAAGCC GGGCGTCGCG CTGGAAGCCC AGGCCGATGA CGATCTGATG 
TGGATCCGCG AACCCTTTCT CGGTCGTGGT CCGGAGCTGC CCTATACGGT TGTACATGGA 
CATACCCCGA CCGATGCGGT CACCTTCGGC AAGAACCGGA TCGGCATCGA TACCGGCGCC 
TATGCCTCAG GACGCCTCGC AGTTTTGCGG ATTGCCGATG GACATACGAG CCTGATCTAG 

 

Protein sequence

MIKLLRKFLD VGSETGVAGM RSRVDIDPKA FSAIYAVGDV HGCYAELLEA ECRILHDAGS 
IDGPKLIVML GDYVDRGPSS RRVIDHLMAP LAPGFERVSL CGNHDDVFCH FLDDPSAGRR 
WLDFGAAATL YSYGIDIDHA LHQAGSFKGL SSELARAIPE SHYAWLKSLP VMLKVGQFLF 
VHAGLKPGVA LEAQADDDLM WIREPFLGRG PELPYTVVHG HTPTDAVTFG KNRIGIDTGA 
YASGRLAVLR IADGHTSLI