| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3467 |
|---|
| Symbol | |
|---|
| ID | 7387067 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 2872650 |
|---|
| End bp | 2873468 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643652313 |
|---|
| Product | metal dependent hydrolase |
|---|
| Protein accession | YP_002550496 |
|---|
| Protein GI | 222149539 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGATA TACGTCGTTT CGGGTGCTAT GATGTGACGA TCATGGTCGA TGGTGTTTTT
AGAGCGCCGA TTGAACATCT GGATCACGCC AGCAGTGACG TGGTGCGAAA TGCAGCGGTC
GCGGCGTGGC CGGCACCCAC CATTGATATG GACGTCAATT TCTTCGTGCT GTCGAGCGCT
GACGGCCTTA CCCTGGTCGA TGCGGGAACA GGCCCTTATT GGGGTCCTGA ACTGGGGCTT
GGAAGGGCTG CGCTGGAAAG GGCTGGAATA AGCCGCGCCG ATGTGCGCCG GGTTCTCCTC
ACCCATTTGC ATGGCGACCA TGCGCTGGGC CTTTTTGACG CCGCCGGACA ATATTTTCCG
CAAGCGGAAA TCGTCGTCCC GCAAGCGGAT CTGGCCTTTT TTACCAATGT CGCGCTGAAG
GAGACCATCC CCGTCTATCG GCGTGGTGGC TTCGACATCG CTGCACGCCT GCTGGAAATC
TATCCAGATC GTGTGCGCCC TGTCCCGGAA GGGCCAGTAC TTCCTGGAAT AGAGATGGTT
TCCATGCCCG GCCACACGCC TGGTCACTCC GGCTATCTGA TTGGCGAGGG GGCGGAAAAG
CTCGTGCTTT GGGGCGATCT TGTGCATGCG CCCAAACTTC AACTTGATGA TCCCGATTTC
TGCTTCATCT ACGACGCGGA TGCCAGACAG GGCGCCAACA GCCGCCGGAC CATCTTCACC
CATGCAAGCG AAAAAGGCTG GACTGCCTCA GGCGGCCATG TTTCCGGTTT CATGCGGGTG
GAAAAAGCAG ACAAGGGCTG GCATCTCGTC GCGGCCTGA
|
|---|
| Protein sequence | MTDIRRFGCY DVTIMVDGVF RAPIEHLDHA SSDVVRNAAV AAWPAPTIDM DVNFFVLSSA
DGLTLVDAGT GPYWGPELGL GRAALERAGI SRADVRRVLL THLHGDHALG LFDAAGQYFP
QAEIVVPQAD LAFFTNVALK ETIPVYRRGG FDIAARLLEI YPDRVRPVPE GPVLPGIEMV
SMPGHTPGHS GYLIGEGAEK LVLWGDLVHA PKLQLDDPDF CFIYDADARQ GANSRRTIFT
HASEKGWTAS GGHVSGFMRV EKADKGWHLV AA
|
|---|
| |