| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2871 |
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| Symbol | deaD |
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| ID | 7385982 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2387742 |
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| End bp | 2389763 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643651891 |
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| Product | cold-shock dead-box protein A |
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| Protein accession | YP_002550076 |
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| Protein GI | 222149119 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.975529 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGATT ATGACGGCAT CGTCCCGGCG ATTGCCGAGG CCTTGCGCAA ACGTGGCTAC
GCCACCCTCA CCCCCGTTCA GCAAGCGATG ATCGATACCG ATCTCGAAGG TAGGGATGCG
CTGGTTTCGG CCCAGACAGG CTCCGGCAAG ACAGTGGCTT TCGGCCTGGC GCTGGCTCCG
ACCCTGCTGG GTAGCGAAAA CCGTTTCGGT CGGGCCGTCA AGCCTTTGGC GCTGTGCATT
GCGCCAACCC GCGAGCTGGC CTTGCAGGTG CAGCGCGAGC TGGAATGGCT CTATGAAAAC
ACTGGAGCGA TTTTTGCCAC CTGCGTCGGC GGCATGGACA TCCGCAACGA GCGTCGGGCG
CTGGAGCGGG GCGCCCATAT CATCGTCGGC ACACCTGGTC GTTTGCGCGA CCACATTACC
CGCCGGGCGC TCGACCTCTC CGGCCTGCGC GCCGTGGTGA TGGACGAGGC TGACGAAATG
CTGGATCTCG GCTTCCGCGA GGATCTGGAA TTCATCCTGA AAGAATCGCC GGACGAGCGC
CGCACCCTGA TGTTCTCGGC CACCGTGCCG CGCTCCATCG CCGATCTGGC CCGCAGCTAT
CAGCGCGATG CTAAGCGGAT CGAGACGGTT TCCGAACAGA AGCAGCATAT CGATATCGAA
TATCGCGCCA TGCTGACCGT GCCTGCCGAC AAGGAAAACG CGATCATCAA CGCGCTGCGC
TTTTATGAAG CCCGCAACGC CATCGTGTTC TGTTCCACCC GCGCCAATGT CAACCATCTG
ACCGCCCGCC TGCACAATCG CGGCTTTTCC GTCGTGGCCC TGTCAGGCGA ACTTTCGCAG
AGCGAGCGCA CCCATGCGCT GCAAGCCATG CGCGATGGCC GCGCCCGTGT ATGCGTCGCG
ACAGACGTTG CAGCCCGCGG CATTGATCTC CCCGGCCTGG AACTGGTTAT CCATGCCGAC
CTGCCGACCA ATTCCGAAAC CCTGTTGCAC CGCTCTGGCC GCACAGGCCG CGCCGGCAAC
AAGGGCGTTT CGGCACTGAT TGTACCGATG AGTCAGCGCC GCAAGGCCGA ACGTATTCTG
GGCGGTGCCA ATGTCCAGGC CGCCTGGGTC AAGCCGCCTT CCGCCGATGA AGTGATTGCC
CGCGACGATG AGCGCCTGCT GGCCGATCCG GTGTTCAGCG AGGCCATCAG CGAGGAAGAA
GCCGCCACCA TCGCCCGGTT GCTCGAGGCG CATGGCGCAG ACAAGATCAC GGCTGCCTAT
CTGCGCGCCT ATCGCAGCAC CCGGTCTGCC CCGGAAGACC TGATGGAGGT CAAGATCCAG
GCGGAACGTC CCCGCCGCGA GAATGACACC TATGAGCCCA ACACCCCGTC GCGTCCGCGC
AGCGAGTTTG GCCCCAGCGT CTGGTTCTCG CTGTCCGTTG GCCGCCGCCA GAGCGCGGAG
CCGCGTTGGC TGATTCCGAT GCTGTGCCGC AACGGCAATA TCACCAAGAA CGAAATCGGC
GCGATCAAGA TGCAGCCGGA AGAGACCTTC GTGGAGATCG CCCAGGCCAA TCTCGAGCAG
TTCCTGACGG CTCTTGGCCC CAACAAGACG CTGGAACGCG GCATTATCGT CAAGCAATTG
CCTGGCATGC CCGACTTCAA CGCGCCGCCA AAGGAGCGCG CAGCCCGTCC GCCACGCGAC
GATAGCGACT TTGCCGAACG CAAGCCCCGC GCTGCCCAAG GCGACAAGAA GCCCTATGCC
GCCAAGGCCG AAGCCACCGA GCGCCGCCCC TACAAGGACG ACCTGGCCAA GGCCGATGAC
GATGTTTGGG GCAATCCGAA GCCTGCGTCT TCCTTCAAGA AAAAATCCAA TGCCGCTGGC
GACAGCCGCA GCTGGGACAA GCCCAAGGCC GATTGGGCGG GCAAGAGCGA TAAGCCCGCT
TATGCAGGCA AGGGCGAGAA GCCCGCTTAT GCAGGAAAGC CAAAGGGCAA GTTCGAAGGC
CCGGCTGGCG GTGCCAAGAA AAGCTTCAAG CCGAAAGGCT GA
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| Protein sequence | MTDYDGIVPA IAEALRKRGY ATLTPVQQAM IDTDLEGRDA LVSAQTGSGK TVAFGLALAP
TLLGSENRFG RAVKPLALCI APTRELALQV QRELEWLYEN TGAIFATCVG GMDIRNERRA
LERGAHIIVG TPGRLRDHIT RRALDLSGLR AVVMDEADEM LDLGFREDLE FILKESPDER
RTLMFSATVP RSIADLARSY QRDAKRIETV SEQKQHIDIE YRAMLTVPAD KENAIINALR
FYEARNAIVF CSTRANVNHL TARLHNRGFS VVALSGELSQ SERTHALQAM RDGRARVCVA
TDVAARGIDL PGLELVIHAD LPTNSETLLH RSGRTGRAGN KGVSALIVPM SQRRKAERIL
GGANVQAAWV KPPSADEVIA RDDERLLADP VFSEAISEEE AATIARLLEA HGADKITAAY
LRAYRSTRSA PEDLMEVKIQ AERPRRENDT YEPNTPSRPR SEFGPSVWFS LSVGRRQSAE
PRWLIPMLCR NGNITKNEIG AIKMQPEETF VEIAQANLEQ FLTALGPNKT LERGIIVKQL
PGMPDFNAPP KERAARPPRD DSDFAERKPR AAQGDKKPYA AKAEATERRP YKDDLAKADD
DVWGNPKPAS SFKKKSNAAG DSRSWDKPKA DWAGKSDKPA YAGKGEKPAY AGKPKGKFEG
PAGGAKKSFK PKG
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