| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2229 |
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| Symbol | |
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| ID | 7386334 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1831236 |
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| End bp | 1832432 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643651411 |
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| Product | GGDEF domain protein |
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| Protein accession | YP_002549605 |
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| Protein GI | 222148648 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.728282 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCACCG TATCTCTTGA AGCTATCGAC CGGCAAATCG CCCGAGGCTT CAAGGCGTTG
CGGTTCAGCC CCGCCGTAGA AGCGGAATTT CTTCAGGAAT ATGTCGCCAA TCGGGTCAAG
CTGACACCAT TCTGGGCGGT AATCGGCACA CTTATTTACG ACGCCGTTTT CATCGGCGAC
GCGACGATGA TGGCCGATGT GTTCGATAAA CTGCTGATCG TACGCTTCGG AATATTCACG
CCTTTCGCAA TTATCAGCGT GCTTGCCGTA AGGCGCTGGC GCACGGCCCT TAATTACGAA
CTTCTGTCGC TGGGAATAGG CACGCTCAGT ATTCTCCTGC CGATGTCGGT CGCAATCTAC
AGCCAAAGCC CGTACATGTT CGTCTATCAG AACGGCAATG TGGCTGCTTT CCTGTTTTTC
GTCATTGCGC TGCGGCCACG GTTTCATATC GTGGTGATTG GCCTGACGCT GATGTGCGGC
GTGCTGTTGA AAACCGCAAA ACTGAACGGC TCATTCGACG ATATCACTTA TAGCGGGTTG
GTCAGTTTCT ACATCACGAT CGCGATTTTC CTGGCGCTAG GCGCCTATTT TCTCGAACAC
GCTGATCGAA TGAATTTTCT CAACAGGCTG CGTGCTGGCC TACTGCAAAA GCAGTTGGAG
CATAACGCCG CCCGTGATGA GCTGAGCGGC CTGCTGAACC GTCGCTCGCT GGTACAGGTC
GCGACCGACT TGTGGAAAGG CAGATCACCG GCAACACATG TTTGCGCCAT CATGCTCGAT
ATCGATGATT TCAAACTTTA CAACGATGTC CACGGCCATC TGGAAGGGGA TGAGTGTCTG
CGCACCGTCA GCCAATGCAT TCGCGACAAT GCCGGTGAGA AAGGCTTCGC CTTCCGCTAC
GGCGGCGAGG AAATGCTCGT TTTGCTACCG AATACGGATG TCGATGCCGC CTGTGCAATA
GCAGAAGCCA TCCGCCGGGC AATCGAGTGC ATGAACATCC CGCACTTGGG CAAAGGCAGG
GGCCAGGTGA CAACGGCAAG TCTGGGCGTA GCGGAGGGCC CTACGGCAAC GGTTTCGTTG
GAAGACCTGC TGAACCGCGC CGACGCGGCC CTTTACGAGG CAAAGCGCAG CGGGCGCAAT
CGTGTCTGCG TGAGCGGGGC AACGCAGCTC GGTCTGGAAT TTGCCAGGGA AAATTAA
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| Protein sequence | MATVSLEAID RQIARGFKAL RFSPAVEAEF LQEYVANRVK LTPFWAVIGT LIYDAVFIGD
ATMMADVFDK LLIVRFGIFT PFAIISVLAV RRWRTALNYE LLSLGIGTLS ILLPMSVAIY
SQSPYMFVYQ NGNVAAFLFF VIALRPRFHI VVIGLTLMCG VLLKTAKLNG SFDDITYSGL
VSFYITIAIF LALGAYFLEH ADRMNFLNRL RAGLLQKQLE HNAARDELSG LLNRRSLVQV
ATDLWKGRSP ATHVCAIMLD IDDFKLYNDV HGHLEGDECL RTVSQCIRDN AGEKGFAFRY
GGEEMLVLLP NTDVDAACAI AEAIRRAIEC MNIPHLGKGR GQVTTASLGV AEGPTATVSL
EDLLNRADAA LYEAKRSGRN RVCVSGATQL GLEFAREN
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