| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1489 |
|---|
| Symbol | peh |
|---|
| ID | 7386457 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1247490 |
|---|
| End bp | 1249124 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643650865 |
|---|
| Product | Polygalacturonase/Pectinase |
|---|
| Protein accession | YP_002549070 |
|---|
| Protein GI | 222148113 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5434] Endopolygalacturonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGGAC CTGTTTTTGC CCGCCTGTTT CAACGGTCTG CTTTAGGTCG GATGCTTGGC
GCGGTCGCCA TTTGCACCCT GTCGCCGGTT ACTGTCTGGG CGGCGGAGCC GGCTGTTGCC
ACCCAATGGG GGTCGATGAC CGCGCCGGAG GTTCCCTCAA ATCTCTGCGC GACATTGACG
GCTGGCCTGA CGGCCAAGGA CGGCTCCCTC GACCATGCCG ATGCCGATGG CAAGGCTCCC
CATCCAGACC AGATGCGCTT GCAGGCTGCC ATTGACGGCT GCGCGGGCGG TGCCGTCAAG
CTCGTCCCGG GGGCTGAGGG GCAGGATGCG TTTTTGAGCG GACCGCTGAA CTTGAAGAGC
GGCGTCATGC TGTGGATCGA CAAGGGCGTG ACGCTGTTTG CCTCCCGCGA TCCCAAGGAT
TACGACAGCG GTGCTGGTGA TTGCGGTACG GCCAACACCT CATCCGCCAA GACCTGCAAG
CCGCTGATTG CGGCCAAGGA CACCAACGGC GCTGGCATCG TCGGTGAGGG GCGCATCGAT
GGACGCGGCG GTTCGCTGCT GTTGTCCGGC GACAATGCCG GTAAGCGATC CTGGTGGGAT
GTGGCCTGGC AATCCAAGCA GGGGTTGATC CAGCATGTGT TCCGGCTGGT AGAAATTGAT
GGCGGCGAGA ATTTCACCCT GCACCGGATT ACGCTGTTGA ACAGCCCGAA TTTTCATGTG
GTGAGCAATG GTGTGACGGG CCTGACCGCC TGGGGGATCA AGATCCTCAG CCCCAGTGCC
GTCTATACCC GCCCAAATTA CGCTTGCCCG CCGGAGACCA CGCCTGACAA ACTGACGCCC
GCCACCTGTT TCACGCCTGA TACGGTCAAA AATACCGATG GTTTCGACCC GGGTCAGTCC
TCGAAAGTCG TGCTCGCCTA CAGCGCGATC AGCACCGGCG ACGATCATGT GGCGATCAAG
GCGGGCGGCG ACAAACCATC GACGCGCATG ACTTTTGCCC ATAACCGGTT CTATTACGGC
CATGGGATGT CGATTGGCTC CGAGACCGAT GCTGGCGTGG ACGGTATCCA TGTCTATGAT
CTGGTGATGG ATGGCCATGA TAGTCCCAAC GGCAATGGCC TGCGGATAAA GTCGGACACC
TCGCGCGGCG GCAAGGTCAC CAATGTGCTG TATGAAGATG TCTGCATGCG CAATGTCGCC
TTTCCCTTGG TGTTCGATAC CCGCTACTCG GACAAAGCCG GCGATCGTAT CCCGGATTTT
TCCGGCATCA CGGTGCGCAA CCTGCGCTAC ATAGGCAGTA CGACCGGCAG CGGCGGCCAT
GTGGTTCTGC GTGGCATCAA GGATGATGCG CATTACCAGC CGCTCGGCCT TTTCCTTGAT
ACCATTCAGT TCGATGGGCC CCAGCCGCTC CTGGTCGGCT CAGCCGATCC GGCCGCAAAA
GATCCGCCGC TCAATGCGCA TGTCACGCTG GGGCCTGGTC CGGTCAGCTT TGCCGACCTT
CTGAAGGCAG ATCCAGCGCG CCGGGTGAAA ACTGTCAATC TCGTGGATGC CAGTGAAGAA
GATCCGGTTC CGCCGCTCGA TTGCTCGTCG GCCTTCGTAC CGTTCTCGAG CTTTTTGGAT
GGGTCGCCGT TTTGA
|
|---|
| Protein sequence | MPGPVFARLF QRSALGRMLG AVAICTLSPV TVWAAEPAVA TQWGSMTAPE VPSNLCATLT
AGLTAKDGSL DHADADGKAP HPDQMRLQAA IDGCAGGAVK LVPGAEGQDA FLSGPLNLKS
GVMLWIDKGV TLFASRDPKD YDSGAGDCGT ANTSSAKTCK PLIAAKDTNG AGIVGEGRID
GRGGSLLLSG DNAGKRSWWD VAWQSKQGLI QHVFRLVEID GGENFTLHRI TLLNSPNFHV
VSNGVTGLTA WGIKILSPSA VYTRPNYACP PETTPDKLTP ATCFTPDTVK NTDGFDPGQS
SKVVLAYSAI STGDDHVAIK AGGDKPSTRM TFAHNRFYYG HGMSIGSETD AGVDGIHVYD
LVMDGHDSPN GNGLRIKSDT SRGGKVTNVL YEDVCMRNVA FPLVFDTRYS DKAGDRIPDF
SGITVRNLRY IGSTTGSGGH VVLRGIKDDA HYQPLGLFLD TIQFDGPQPL LVGSADPAAK
DPPLNAHVTL GPGPVSFADL LKADPARRVK TVNLVDASEE DPVPPLDCSS AFVPFSSFLD
GSPF
|
|---|
| |