| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1431 |
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| Symbol | |
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| ID | 7386415 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1206202 |
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| End bp | 1208331 |
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| Gene Length | 2130 bp |
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| Protein Length | 709 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643650823 |
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| Product | soluble lytic transglycosylase |
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| Protein accession | YP_002549028 |
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| Protein GI | 222148071 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGAGCTA TGCGCATTTT CCGGACGAGT TTGCCGATGA AACGGACCAT TTTGCTCAAG
CTTGCCCTGT CCATAGGTGT GACGGCGCTG GCCCCTGCCG GTGTGTCATG GTCCCAGCCG
ATCCTGGGTG GCGGGGATGT ACCAGCACCC GCCAACCGCC CGGCAGCGCT TTCGGCCTCT
TCGGCCTCTT CCGCATCCTC TGTTTCTGGC GACATTACCG GCTCTATACC GGTTGTCGCG
CCCATGCCGG TAGAACGGTC GCCACTGAAA TCCGGCCTCG ACGCGCTGTC GGACCGCAAC
GGAGCGCTGG CGCTGTCGAT TCGCGATGCC ATGCCTCAAG GGCTGGACCG GCATATGCTG
ACATGGTCGA TTGCCATGTC GGGCCTTGCC GGTATTCCTT CCTCGGAAAT TGCCAATGCC
CAACGTGAGC TGAAAGGATG GCCGGGGCTT TCCGCGTTCC GCGCCAATTC GGAAAAAGCG
CTGTTGCGCG AAAACCCACC AGCCCCGGAT GTATTGGCAG CCTTCGGAGA GACCAAACCG
GAAACGGCAG AAGGCGCGAT CATCCTGACC CGAGCCCTGG TGGCAAGCGG CAATCGCAGC
CGCGCCGTTT TCATCCTGAA AGACCTGTGG CGCAGCCAGC CGCTGGAGAT CGCCACCGAA
GACCGCATCC TGAGCGAATT CGGCGGTTTG TTGACCCGCG CCGATCACAA GCTGCGGATG
GATTATCTGA TGTATCGCGG CCGCACCGCC CAGGCCAAGC GATTCGCGTC GCTTGGCGAT
GCTCAGTCTC TTTATGCCGC ATGGATGGCG GTCAACAGCC GTTCGCCCAA GGCCGTGGCA
TTGATCCAGG CCGCCAGCGC GCGTTTTGGC AATGACTCCG CATTGCTTTT CGTCAAGATC
GAGTATCAGC GCCGCCAGGA CAATTACCAG GACGCGGCAA AGCTTTTGGC ACTTGTTCCC
AGAGATGCGT CGCGATTGGT CGATCCAGGC GAATGGTGGA AAGAACGGCG CATCGTGGCG
CGCGGCCTTG CCGATGACGG CAAATACCGG CTGGCCTATC AGGTTGCCGC TGGCTATACC
GCCACCGACC CGGTCGATAT CGTCGATGCC GAGTTTCATG CGGGCTGGTA TGCCCTGCGC
GGCCTCAATG ATCCAAAGAC CGCAGCCCAG CATTTTCGCC GGATTGTCGA GGCGTCGAAC
CGGCCTTTGT CGGCCTCGCG CGCCTATTAT TGGCTGGGGC GTGCCGATGA AGCGCAGGGC
AATCCGACCG CAGCGAGGCA GGATTTCGTC CGGGCAGCCG ATTATCCCGG CACATTCTAT
GGACAATTGG CAGGCGCCCG CCTGAAGCAG ACACGGCTCG ACATTCGCTA TCCGACACCA
ACGGAGGAAG ACCGCCGTCG CTTCGCCAAC CGGGAAGCCA TTATCGCTAT CGATCGCTAC
AAGGCCGCCG GTCACGAATG GCGCGGCGCA AGCCTTTACC GGGCCTTGGC CGAACAATTG
CAAAGCCCTG GAGAACTGGC GCTTCTCGCC TCTAAAGCCG AACGCGCCGG CAATCACCAA
TTGTCGTTGC AAGTGGGCAA GACCGCCTAT GGCCGCGGCA TAAACGTGCC TGCCCTGGCC
TTTCCCATCG GCGTCATTCC GGCTTCCGCC AATATCGCCG GCTCCGGCAA GGCCCTGGCC
TATGCCATTG CGCGCCAGGA AAGCGCATTC AACCCGGCAG CCGTGTCCGC CGCCAATGCC
AAGGGCCTGC TGCAACTGAT GCCCGCCACG GCAAAGGCCG TCGCCAAGCG TCATGACATG
GCATTTTCAC CGGACCGGTT GACCCAGGAC GCCGCTTATA ACGCCACGCT CGGCGCCCAT
TATCTGGGCG AGCAGATCGA TGCTTTCGGC GGCTCCTATA TATTGACGTT CATTGCCTAT
AATGCCGGAC CGAAGCGGGT GCCGGAATGG ATCAACCGCT ATGGCGATCC CCGTGGCATG
CCAATTGATG ACGTGGTCGA CTGGATCGAG CGCATCCCCT TCCCAGAAAC GCGCGGCTAT
GTGCAGCGCG TCATGGAAAA CTACCAGATC TACAAGACCC GGCTGGGGCA GACCGCAGAT
ATCGAGCACG ATCTTCGCTA TGGCCGCTGA
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| Protein sequence | MGAMRIFRTS LPMKRTILLK LALSIGVTAL APAGVSWSQP ILGGGDVPAP ANRPAALSAS
SASSASSVSG DITGSIPVVA PMPVERSPLK SGLDALSDRN GALALSIRDA MPQGLDRHML
TWSIAMSGLA GIPSSEIANA QRELKGWPGL SAFRANSEKA LLRENPPAPD VLAAFGETKP
ETAEGAIILT RALVASGNRS RAVFILKDLW RSQPLEIATE DRILSEFGGL LTRADHKLRM
DYLMYRGRTA QAKRFASLGD AQSLYAAWMA VNSRSPKAVA LIQAASARFG NDSALLFVKI
EYQRRQDNYQ DAAKLLALVP RDASRLVDPG EWWKERRIVA RGLADDGKYR LAYQVAAGYT
ATDPVDIVDA EFHAGWYALR GLNDPKTAAQ HFRRIVEASN RPLSASRAYY WLGRADEAQG
NPTAARQDFV RAADYPGTFY GQLAGARLKQ TRLDIRYPTP TEEDRRRFAN REAIIAIDRY
KAAGHEWRGA SLYRALAEQL QSPGELALLA SKAERAGNHQ LSLQVGKTAY GRGINVPALA
FPIGVIPASA NIAGSGKALA YAIARQESAF NPAAVSAANA KGLLQLMPAT AKAVAKRHDM
AFSPDRLTQD AAYNATLGAH YLGEQIDAFG GSYILTFIAY NAGPKRVPEW INRYGDPRGM
PIDDVVDWIE RIPFPETRGY VQRVMENYQI YKTRLGQTAD IEHDLRYGR
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