| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0950 |
|---|
| Symbol | |
|---|
| ID | 7387737 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 797651 |
|---|
| End bp | 798655 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643650465 |
|---|
| Product | Signal transduction histidine kinase protein |
|---|
| Protein accession | YP_002548673 |
|---|
| Protein GI | 222147716 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3920] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.29493 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGTTAG CCTCTCGCCA GCCGATGTGC TTCTGGTGGG GACCGGACCT GCTACAATTC
TATAACGATG CCTATGAGCC GATACTGGGC CTGCGCAGAG ACAAGGCACT GGGCCTTCCG
TTTACCGAAA TCTGGGCGGA TGTCTGGGAC GGGGTCCTGC CCTATGTGCG CAGCGCCCTG
GCCGGCAAGG CGACATGGGA AGAAAATATG CCGCTGGTGA TGACCCGCAA CGGTTTTGCC
GAACAGACCT ATTGGACATT TTCCTATAGC CCGCTTTATG GCGATGATGG TGCTGTGCAT
GGGCTGCTGA ACATCGTCAC GGAGACCACG CAGGCCGTGC TTGACCGCCA GGCACTGGAG
ACGAACCATG AGGAAACCCG CCAGCATCTT CGTCAAAAAG AAGCATTCGA GCAGGAATTG
CGCCTGCTGA ACGGCGAACT CGCGCATCGG GTGAAAAACA TGCTGGCCAT GGTGCAATCC
ATAGTCGGCC AGACCATGCG CGGCGCGCAA TCGCTGCCGC AGGCGGCGAG CCTGGTTTCG
GCCCGCATTC AGGCCTTGTC CAAGGCGCAG GATTTGTTGA CCGGCAAAAG CGTGGCCTCG
GCGGATATCG CCGAAGTGGT CGAAAATGCC ATCGAGCCGC ATCGTGACAG GCCTGACCGT
TTTCAGGTTG TTGGACCGTC TTTACAAGCG TCTTCGCGCC AGGCGCTCGG CTTGTCGCTG
GCCCTGCATG AGCTTGCCAC CAATGCCACA AAATATGGAT CGCTATCGGT GACGGAGGGT
CAGGTGCGAG TGGAATGGGG CAAGGATGAC GATGGCCGTT TCTTCTTGCG CTGGAGCGAG
CGCGGTGGGC CGCCGGTGTC TGAGCCGGAG CGTCGTGGCT TCGGCTCCAA GCTGACGGAG
CGCGTTGTGG CGGATCTGTT TCGCGGCGAG GCGAAGATTG ATTTTGCGCT TGAAGGCGTG
GTGTTTTTGC TGCGCGGACA ATTGGATCAG GTCGCCAGCC ACTGA
|
|---|
| Protein sequence | MVLASRQPMC FWWGPDLLQF YNDAYEPILG LRRDKALGLP FTEIWADVWD GVLPYVRSAL
AGKATWEENM PLVMTRNGFA EQTYWTFSYS PLYGDDGAVH GLLNIVTETT QAVLDRQALE
TNHEETRQHL RQKEAFEQEL RLLNGELAHR VKNMLAMVQS IVGQTMRGAQ SLPQAASLVS
ARIQALSKAQ DLLTGKSVAS ADIAEVVENA IEPHRDRPDR FQVVGPSLQA SSRQALGLSL
ALHELATNAT KYGSLSVTEG QVRVEWGKDD DGRFFLRWSE RGGPPVSEPE RRGFGSKLTE
RVVADLFRGE AKIDFALEGV VFLLRGQLDQ VASH
|
|---|
| |