| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0554 |
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| Symbol | |
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| ID | 7388960 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 472157 |
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| End bp | 473032 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 643650189 |
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| Product | transcriptional regulator LysR family |
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| Protein accession | YP_002548401 |
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| Protein GI | 222147444 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0936885 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCTTT TAGAGTTGAA GGCTTTTGTT TTTGCAGTAC AAACCGGCAG TATCACTCAA
GCCGCCTTCC AGCTTGGGCG TGTTCAATCG AGTGTCTCAC TGCGTATCAA GCAATTGGAG
ACAGAGCTTG GCGTCGAATT GTTGAGCAGG GACAGAGGCG GCGTACGAAC GACAGCAAGA
GGCCAGATAC TCTATGATTA CGCCACGCGA ATTCTGGCTC TTGCCCAGGA AGCCAAAGGC
GAAGTGATGT CACCAAATAC AGGCGAAATT GTTCGGCTTG GAACGATCGA AACAATTTCG
CCCGATTGCA TCGACTCGCT GGTCAGATTG CTGTCCGGCT TCGACGGCAT GGGTGTGGAT
GTTTATGTAG ATGGTGCTCT TTCACTTGTG GAAAGTCTTC GCGAAGGGCG CATTCATGCC
GCCATTGTCG GCGCCGGGTT TGCCCCGCCT GAGTGCATAC GTATCCCGCT TTATGGAGAG
GCAATGGTGT TGATTTCATC GTTAAAATAT CCGCGGATTG ATCTCGTCAA CCAGATCGCC
AACGAGATTT TTCTCGTCTG CAAAAAGGAA AGCGCCTGTA GTCGGCATCT CGCCATGCTT
TTCATGGAGG GGGGCTTCCA GCCAGCCCGT ATTTCAGAAT GCGGATCTTT CAGCATCCTG
ATGTCCAGCG TGGTGCGCGG TATGGGGATT GCGCTCGTAC CACTGTCAGC AGTGCTGGGC
TCCGCGCATG AGAAACAGGT CCTTATCCAT CCACTCAGCG GGCATTTTTC CACATTTCAG
GTCGAGTTCG TCTGCCCACA ACCCAAAGGG CGCCCAATCC TGGAACGACT TATCGAGAAA
ATTTCCCAGG AGTTCGTGGG ACAGAAACCA AATTAG
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| Protein sequence | MDLLELKAFV FAVQTGSITQ AAFQLGRVQS SVSLRIKQLE TELGVELLSR DRGGVRTTAR
GQILYDYATR ILALAQEAKG EVMSPNTGEI VRLGTIETIS PDCIDSLVRL LSGFDGMGVD
VYVDGALSLV ESLREGRIHA AIVGAGFAPP ECIRIPLYGE AMVLISSLKY PRIDLVNQIA
NEIFLVCKKE SACSRHLAML FMEGGFQPAR ISECGSFSIL MSSVVRGMGI ALVPLSAVLG
SAHEKQVLIH PLSGHFSTFQ VEFVCPQPKG RPILERLIEK ISQEFVGQKP N
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