| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1892 |
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| Symbol | |
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| ID | 3681766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | - |
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| Start bp | 2347523 |
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| End bp | 2348521 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637717233 |
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| Product | RNA polymerase sigma factor SigD |
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| Protein accession | YP_322409 |
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| Protein GI | 75908113 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.96303 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCCTAC CAACAGAAAC ATCATCACCA AAGAGTAGCG CCATGAAGAC CGCTCCAACA
GCCACAGACC TCGTGCGGAC TTACCTGCGT GAGATAGGAC GTGTACCACT TTTAAGTCAT
GAAGAAGAAA TTCGTTATGG TAAACAGGTA CAGCGTTCCA CAACGTTGCA AGAAGTGCGA
GAGGAATTGG CAACCCAGTT AGGGCGTGAA CCAAGCATAG AAGAGTGGGC AAAAGCTGCC
AATATCAATT CAGCAGATTT GCTGGGGGCG ATCGCCGATG GCGAAGTTGC CAAACGCAAA
ATGGTAGAAG CCAACTTGCG GCTGGTTGTA TCCGTTGCCA AAAAATATAT TAAACGTAAC
GTCGATTTAT TAGACCTCAT CCAAGAAGGC AGTATTGGAA TGCAACGAGG TGTAGAGAAA
TTTGACCCCA CCAAGGGGTA TAGATTTTCG ACTTACGCCT ATTGGTGGAT ACGTCAAGCC
ATCACGCGGG CGATCGCCGA AAAAGCACGC ACTATCCGCC TACCCATCCA TATCACCGAG
AAGCTGAACA AAATCAAAAA AGCCCAGCGT CAGCTCTCCC AGAGATTGGG ACGTGCGCCT
ACAGCCGGTG AACTAGCCAA CGAATTAGAA CTCACACCCA AACAAGTTAG GGAATATTTA
GAAAAAGCTC GTCTCCCCTT ATCCTTAGAT TTACGCTTAG GAGACAATTA CGACACCGAA
CTAGGAGAAA TGTTGGAAGA TCCAGGCGCT TCTCCGGAAG ATTTTGTCAT GCAATCTTCC
CTATCCAACG ACCTAGAGGT ACTGATGGAG CAATTAACGC CCCAGCAGAA AGAAGTAATC
ACACTCCGCT TTGGCTTAAT CGATGGGCAA GCCCTAACTC TAGCAAGAAT CGGCGAAATA
CTTAACATCA GCCGCGAACG GGTCAGACAA ATCGAACGGG AAGCGCTCAC CAAACTGCGT
AAGTCTAAAG CCAACATGGG TGAGTATTTA GCTAGTTAG
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| Protein sequence | MTLPTETSSP KSSAMKTAPT ATDLVRTYLR EIGRVPLLSH EEEIRYGKQV QRSTTLQEVR
EELATQLGRE PSIEEWAKAA NINSADLLGA IADGEVAKRK MVEANLRLVV SVAKKYIKRN
VDLLDLIQEG SIGMQRGVEK FDPTKGYRFS TYAYWWIRQA ITRAIAEKAR TIRLPIHITE
KLNKIKKAQR QLSQRLGRAP TAGELANELE LTPKQVREYL EKARLPLSLD LRLGDNYDTE
LGEMLEDPGA SPEDFVMQSS LSNDLEVLME QLTPQQKEVI TLRFGLIDGQ ALTLARIGEI
LNISRERVRQ IEREALTKLR KSKANMGEYL AS
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