Gene Apre_0967 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApre_0967 
Symbol 
ID8397753 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnaerococcus prevotii DSM 20548 
KingdomBacteria 
Replicon accessionNC_013171 
Strand
Start bp1033757 
End bp1037269 
Gene Length3513 bp 
Protein Length1170 aa 
Translation table11 
GC content31% 
IMG OID644995314 
Producttranscription-repair coupling factor 
Protein accessionYP_003152716 
Protein GI257066460 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG1197] Transcription-repair coupling factor (superfamily II helicase) 
TIGRFAM ID[TIGR00580] transcription-repair coupling factor (mfd) 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.8826 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAAAT TATTAGAAAA TATCAACTCT TTAGAGCAAG TTAAGCAAAT AGAAAATAAT 
ATAGATGATT ATTCACCTAT ATATTTATCA GGACTAACTG ACGGTTTCAA GCCTCACTTA
GTCCTTGCTT TGTTTGAAAA GTTTAAAGAA AGCCTAGTAA TAATTGCAGA AAATGAAAAA
AGGGCTGAGA TTTATCTCGA TAGTATAAAC GGAATTATAG AAAATAAGGC ATATTTGTTC
CCTAGTTTGG ATATTAATTT TTATAATATT AAGTCAATAG ATAATAGAAA GCTTTCTCAA
AGGATGGAAG TTCTAACGAA GCTTGCTAAA GGAGAAAACT TTATAGTCAT AACTACACTA
AAGGCTATGA CAAATAAACT GACCACTTTA GATAGATTTA ACAAGTCTTT TGTTAAAATA
AAAGATGAAG ATATTATTGA TGTTAATAAC TTCATAGAAA ATCTTATAAA TCTTAACTAT
ACAGCTAATT CTCTTGTAGA GAATAAGGGA GACTTCGCTA AGAGAGGTTC TATTATAGAT
TTCTGGCCCG TTTCATACGA CAATCCAGTT AGAATTGAAC TATTTGATGA CGAGGTAGAC
TCCATCAGAT TATTTGATAA GGACAGTCAA AGAACAATAG AAAAGATTTC TGAGGCTGAA
ATTAGCCCTG TTACTGAACT TATATATTCA AAAGACGATT ATGATAAGGT GATAAAAAAT
ATTAACAGGG AAATAATGTC TTTAGATAAT GATTCAAAGG AAATAAATCG ACAGAAGCTC
ATAGATAAAT ATAAACAAAT TACAGCTTTT ATTGAAGAGA GTATGTTTGT TAGTAATATT
GACCTTGTAA ATCCCTATAG AAAGGATGAC TATTCTAGTT TCTTAGATTA TATCCCAAAG
AGTGGTCTGA TATTTTTTGA TGATGTTGCT AGAGTTATAG AAGACTATGA TAACTTTTAC
GAAAATTTCT TCGAAGACTT GAGTCTACAA ATGGAGAATA ATGAGGTTTT CAAATCTTTT
GAGCATGCAA GAATACTGAT TGATGATATT TATGAACAAA TAGATAAGTT TAGAATAATA
AACCTAACAT CTATTCTAAA AAAATCAAAG CTCTTTAATC CTAGAAAAAT TATAGAGATA
AAAACAATAG AATCAGAAAA TTTCAATCGA CGAGTAGATT ATTTCATAGA TAGGACAATA
GAACTTGCTA ATAGCGACAA AAAGGTATTA ATACTTGAAG GTAATGAAAA AACTGCTTTT
CAGCTGATAG ATGCGTATTT AGAAAAAGAT TTTACGCAAG TTTCAAAAGT TGGCATAGGT
GAAAGTTTCG AGAAAATCCC TATACAAATC GCAAATGCTA CAAGTAGTAG CGGATATTAT
ATTTATGATC TAGACTTTTA TGTTTTTACC CATAAGGAAA TTTATGGTAG TGAAAGAAAG
GCTCGAAAGA AAAAATCAAA GAACAAGACC TCGTCTAGAG ATATTATCAA TTATTCCGAC
CTTGATATTG GAGATTATGT AGTTCATGAA AATAACGGTA TCGGTATATA TAAGGGTCTT
GAAAAAATTG AAGTAAATAA TATTGAAAAA GACTTTATAG TCATCGAATA TCGAGGAACA
GATAAACTCT TCGTACCAGT AGATCAGATG AATCTAATAA GTAAATATAT AGGAAGTAGA
GGGGAAAGCC CAAAACTTTC GTCTTTGGGG ACTCAAACCT GGCAAAAGGC TAAAGCAAGA
GCCAAAAAGG CTGTTGATGA AATAGCAGAT GATTTGGTTG AATTGTATGC TAAAAGATCT
AAAATTAAGG GGCATGCTTT CTCAAAAGAT ACTACTTGGC AAAATGAGTT TGAAAATTCT
TTCCCTTATG AGGAAACCTA TTCTCAAATA AGATCCATAG AAGAGATAAA AAATGATATG
GAATCTGATA AACCAATGGA TAGACTCCTT TGTGGTGATG TGGGATTCGG TAAGACAGAA
GTTGCTATAA GAGCAGCCTT TAAGGCAATT ATGGATGGAT ATCAAGTAGC ATTTCTAGTT
CCAACAACAA TTCTTGCGAA TCAGCACTAT GAGACCATAA AAAGACGCTT TGATAAGTTT
CCTGTCAATG TTCAAGTGAT TTCAAGATTT AATCCTGGTT CAAAAAATAA ACTAATAATT
AAGGATCTGA AAGCAGGAAA GGTTGATTTA ATTATTGGAA CTCACAGATT ACTATCAAAA
GATGTAGGAT ATAAAAATCT TGGCCTATTG ATTATAGATG AAGAGCAAAG ATTTGGTGTT
AAGCATAAAG AGAAATTAAA AGAATTAAAA TCATCCCTTG ATGTCTTGAC CTTGTCAGCA
ACTCCGATAC CAAGAACCCT TCAGATGTCC TTATCAGGAA TCCGCGATCT ATCTACTTTA
GATGAAGCTC CTGAAGAAAG AATGCCTGTA AATACCTATG TACTTGAATA TGATAATGGT
ATTATTAAAC AAGCTATAGA AAGAGAGCTA AATAGAAATG GTCAAGTCTA TTTTGTCTAT
AACAGAGTTA ATGATATAGA AAAACTCTAC AATCATCTAA TAGAACTTGT TCCTGATGCA
AATATAGCGA TAATTCACGG GAGAATCAGT CCGAAGCAGA TTGAAAAAAC AATGCTTGAA
TTCATAGATG GTGAGATAGA TATTCTCCTA TCGACAACTA TCATTGAAAC CGGGATGGAT
ATATCAAATG TAAATACCAT AATAATCTAT GACTCTGATA TGATGGGACT TGGACAACTA
TATCAGCTTA AAGGAAGAAT CGGGCGAGGA AATAGATCCT CCTACGCATA TTTTACTTAT
AGGACTGGAA AAATATTATC AGAGATTAGT GAAAAAAGAT TAAAATCTAT AAGAGACTTT
TCAGATTTTG GTTCAGGCTA TAAAATAGCT ATGAAAGACC TAGAATTAAG AGGAGCAGGA
AATCTTTTGG GAGAAAGCCA ATCAGGACAT GTCGAAGCAA TAGGATATGA TCTCTATGTT
AAATTCCTTC AAGAAGCAGT AGAAAAAGCT AGTGGTAAGG AAGTAGAAAT CAAAGATAAA
TCTGATGTAT ATATCGATAT AAAGGTCGAT GGATATATTC CTAACTTTTA TATTGAAGAC
CAAGCACAAA AGATTGAGAT TTATAATAGA ATTGCAAGAA TTCAAAATCA AGAAGACTAT
GATGAATTAG TCGCTGATTT AATAGATGTA TATGGCGATA TACCTATAAT GGTAGATAAT
TTAATGTACA TTTCATTGAT AAAATCTATG GCGGATGAAT TATTATTTAG TGAAATTAGA
GAAAAAAGCG GTAATGTAAA CATATATTTC GAAAATAAGG ATGCATTTAG TTTTGAGGAA
TTGGCAGAGA TTAATCAATC ATTTGAAAGA GATATGTCTC TTGATTTATC GACTAATCCA
GCGTTTAAAA TTCCAGTATC TAGAAACAAA CTCTTAGATA CCTATGAACT ATTAAAAACA
ATCGAAAAAG TAAGGAGTAA AAATGAAAAA TAA
 
Protein sequence
MNKLLENINS LEQVKQIENN IDDYSPIYLS GLTDGFKPHL VLALFEKFKE SLVIIAENEK 
RAEIYLDSIN GIIENKAYLF PSLDINFYNI KSIDNRKLSQ RMEVLTKLAK GENFIVITTL
KAMTNKLTTL DRFNKSFVKI KDEDIIDVNN FIENLINLNY TANSLVENKG DFAKRGSIID
FWPVSYDNPV RIELFDDEVD SIRLFDKDSQ RTIEKISEAE ISPVTELIYS KDDYDKVIKN
INREIMSLDN DSKEINRQKL IDKYKQITAF IEESMFVSNI DLVNPYRKDD YSSFLDYIPK
SGLIFFDDVA RVIEDYDNFY ENFFEDLSLQ MENNEVFKSF EHARILIDDI YEQIDKFRII
NLTSILKKSK LFNPRKIIEI KTIESENFNR RVDYFIDRTI ELANSDKKVL ILEGNEKTAF
QLIDAYLEKD FTQVSKVGIG ESFEKIPIQI ANATSSSGYY IYDLDFYVFT HKEIYGSERK
ARKKKSKNKT SSRDIINYSD LDIGDYVVHE NNGIGIYKGL EKIEVNNIEK DFIVIEYRGT
DKLFVPVDQM NLISKYIGSR GESPKLSSLG TQTWQKAKAR AKKAVDEIAD DLVELYAKRS
KIKGHAFSKD TTWQNEFENS FPYEETYSQI RSIEEIKNDM ESDKPMDRLL CGDVGFGKTE
VAIRAAFKAI MDGYQVAFLV PTTILANQHY ETIKRRFDKF PVNVQVISRF NPGSKNKLII
KDLKAGKVDL IIGTHRLLSK DVGYKNLGLL IIDEEQRFGV KHKEKLKELK SSLDVLTLSA
TPIPRTLQMS LSGIRDLSTL DEAPEERMPV NTYVLEYDNG IIKQAIEREL NRNGQVYFVY
NRVNDIEKLY NHLIELVPDA NIAIIHGRIS PKQIEKTMLE FIDGEIDILL STTIIETGMD
ISNVNTIIIY DSDMMGLGQL YQLKGRIGRG NRSSYAYFTY RTGKILSEIS EKRLKSIRDF
SDFGSGYKIA MKDLELRGAG NLLGESQSGH VEAIGYDLYV KFLQEAVEKA SGKEVEIKDK
SDVYIDIKVD GYIPNFYIED QAQKIEIYNR IARIQNQEDY DELVADLIDV YGDIPIMVDN
LMYISLIKSM ADELLFSEIR EKSGNVNIYF ENKDAFSFEE LAEINQSFER DMSLDLSTNP
AFKIPVSRNK LLDTYELLKT IEKVRSKNEK