| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apre_0967 |
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| Symbol | |
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| ID | 8397753 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anaerococcus prevotii DSM 20548 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013171 |
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| Strand | - |
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| Start bp | 1033757 |
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| End bp | 1037269 |
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| Gene Length | 3513 bp |
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| Protein Length | 1170 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 644995314 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003152716 |
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| Protein GI | 257066460 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.8826 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAAAT TATTAGAAAA TATCAACTCT TTAGAGCAAG TTAAGCAAAT AGAAAATAAT
ATAGATGATT ATTCACCTAT ATATTTATCA GGACTAACTG ACGGTTTCAA GCCTCACTTA
GTCCTTGCTT TGTTTGAAAA GTTTAAAGAA AGCCTAGTAA TAATTGCAGA AAATGAAAAA
AGGGCTGAGA TTTATCTCGA TAGTATAAAC GGAATTATAG AAAATAAGGC ATATTTGTTC
CCTAGTTTGG ATATTAATTT TTATAATATT AAGTCAATAG ATAATAGAAA GCTTTCTCAA
AGGATGGAAG TTCTAACGAA GCTTGCTAAA GGAGAAAACT TTATAGTCAT AACTACACTA
AAGGCTATGA CAAATAAACT GACCACTTTA GATAGATTTA ACAAGTCTTT TGTTAAAATA
AAAGATGAAG ATATTATTGA TGTTAATAAC TTCATAGAAA ATCTTATAAA TCTTAACTAT
ACAGCTAATT CTCTTGTAGA GAATAAGGGA GACTTCGCTA AGAGAGGTTC TATTATAGAT
TTCTGGCCCG TTTCATACGA CAATCCAGTT AGAATTGAAC TATTTGATGA CGAGGTAGAC
TCCATCAGAT TATTTGATAA GGACAGTCAA AGAACAATAG AAAAGATTTC TGAGGCTGAA
ATTAGCCCTG TTACTGAACT TATATATTCA AAAGACGATT ATGATAAGGT GATAAAAAAT
ATTAACAGGG AAATAATGTC TTTAGATAAT GATTCAAAGG AAATAAATCG ACAGAAGCTC
ATAGATAAAT ATAAACAAAT TACAGCTTTT ATTGAAGAGA GTATGTTTGT TAGTAATATT
GACCTTGTAA ATCCCTATAG AAAGGATGAC TATTCTAGTT TCTTAGATTA TATCCCAAAG
AGTGGTCTGA TATTTTTTGA TGATGTTGCT AGAGTTATAG AAGACTATGA TAACTTTTAC
GAAAATTTCT TCGAAGACTT GAGTCTACAA ATGGAGAATA ATGAGGTTTT CAAATCTTTT
GAGCATGCAA GAATACTGAT TGATGATATT TATGAACAAA TAGATAAGTT TAGAATAATA
AACCTAACAT CTATTCTAAA AAAATCAAAG CTCTTTAATC CTAGAAAAAT TATAGAGATA
AAAACAATAG AATCAGAAAA TTTCAATCGA CGAGTAGATT ATTTCATAGA TAGGACAATA
GAACTTGCTA ATAGCGACAA AAAGGTATTA ATACTTGAAG GTAATGAAAA AACTGCTTTT
CAGCTGATAG ATGCGTATTT AGAAAAAGAT TTTACGCAAG TTTCAAAAGT TGGCATAGGT
GAAAGTTTCG AGAAAATCCC TATACAAATC GCAAATGCTA CAAGTAGTAG CGGATATTAT
ATTTATGATC TAGACTTTTA TGTTTTTACC CATAAGGAAA TTTATGGTAG TGAAAGAAAG
GCTCGAAAGA AAAAATCAAA GAACAAGACC TCGTCTAGAG ATATTATCAA TTATTCCGAC
CTTGATATTG GAGATTATGT AGTTCATGAA AATAACGGTA TCGGTATATA TAAGGGTCTT
GAAAAAATTG AAGTAAATAA TATTGAAAAA GACTTTATAG TCATCGAATA TCGAGGAACA
GATAAACTCT TCGTACCAGT AGATCAGATG AATCTAATAA GTAAATATAT AGGAAGTAGA
GGGGAAAGCC CAAAACTTTC GTCTTTGGGG ACTCAAACCT GGCAAAAGGC TAAAGCAAGA
GCCAAAAAGG CTGTTGATGA AATAGCAGAT GATTTGGTTG AATTGTATGC TAAAAGATCT
AAAATTAAGG GGCATGCTTT CTCAAAAGAT ACTACTTGGC AAAATGAGTT TGAAAATTCT
TTCCCTTATG AGGAAACCTA TTCTCAAATA AGATCCATAG AAGAGATAAA AAATGATATG
GAATCTGATA AACCAATGGA TAGACTCCTT TGTGGTGATG TGGGATTCGG TAAGACAGAA
GTTGCTATAA GAGCAGCCTT TAAGGCAATT ATGGATGGAT ATCAAGTAGC ATTTCTAGTT
CCAACAACAA TTCTTGCGAA TCAGCACTAT GAGACCATAA AAAGACGCTT TGATAAGTTT
CCTGTCAATG TTCAAGTGAT TTCAAGATTT AATCCTGGTT CAAAAAATAA ACTAATAATT
AAGGATCTGA AAGCAGGAAA GGTTGATTTA ATTATTGGAA CTCACAGATT ACTATCAAAA
GATGTAGGAT ATAAAAATCT TGGCCTATTG ATTATAGATG AAGAGCAAAG ATTTGGTGTT
AAGCATAAAG AGAAATTAAA AGAATTAAAA TCATCCCTTG ATGTCTTGAC CTTGTCAGCA
ACTCCGATAC CAAGAACCCT TCAGATGTCC TTATCAGGAA TCCGCGATCT ATCTACTTTA
GATGAAGCTC CTGAAGAAAG AATGCCTGTA AATACCTATG TACTTGAATA TGATAATGGT
ATTATTAAAC AAGCTATAGA AAGAGAGCTA AATAGAAATG GTCAAGTCTA TTTTGTCTAT
AACAGAGTTA ATGATATAGA AAAACTCTAC AATCATCTAA TAGAACTTGT TCCTGATGCA
AATATAGCGA TAATTCACGG GAGAATCAGT CCGAAGCAGA TTGAAAAAAC AATGCTTGAA
TTCATAGATG GTGAGATAGA TATTCTCCTA TCGACAACTA TCATTGAAAC CGGGATGGAT
ATATCAAATG TAAATACCAT AATAATCTAT GACTCTGATA TGATGGGACT TGGACAACTA
TATCAGCTTA AAGGAAGAAT CGGGCGAGGA AATAGATCCT CCTACGCATA TTTTACTTAT
AGGACTGGAA AAATATTATC AGAGATTAGT GAAAAAAGAT TAAAATCTAT AAGAGACTTT
TCAGATTTTG GTTCAGGCTA TAAAATAGCT ATGAAAGACC TAGAATTAAG AGGAGCAGGA
AATCTTTTGG GAGAAAGCCA ATCAGGACAT GTCGAAGCAA TAGGATATGA TCTCTATGTT
AAATTCCTTC AAGAAGCAGT AGAAAAAGCT AGTGGTAAGG AAGTAGAAAT CAAAGATAAA
TCTGATGTAT ATATCGATAT AAAGGTCGAT GGATATATTC CTAACTTTTA TATTGAAGAC
CAAGCACAAA AGATTGAGAT TTATAATAGA ATTGCAAGAA TTCAAAATCA AGAAGACTAT
GATGAATTAG TCGCTGATTT AATAGATGTA TATGGCGATA TACCTATAAT GGTAGATAAT
TTAATGTACA TTTCATTGAT AAAATCTATG GCGGATGAAT TATTATTTAG TGAAATTAGA
GAAAAAAGCG GTAATGTAAA CATATATTTC GAAAATAAGG ATGCATTTAG TTTTGAGGAA
TTGGCAGAGA TTAATCAATC ATTTGAAAGA GATATGTCTC TTGATTTATC GACTAATCCA
GCGTTTAAAA TTCCAGTATC TAGAAACAAA CTCTTAGATA CCTATGAACT ATTAAAAACA
ATCGAAAAAG TAAGGAGTAA AAATGAAAAA TAA
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| Protein sequence | MNKLLENINS LEQVKQIENN IDDYSPIYLS GLTDGFKPHL VLALFEKFKE SLVIIAENEK
RAEIYLDSIN GIIENKAYLF PSLDINFYNI KSIDNRKLSQ RMEVLTKLAK GENFIVITTL
KAMTNKLTTL DRFNKSFVKI KDEDIIDVNN FIENLINLNY TANSLVENKG DFAKRGSIID
FWPVSYDNPV RIELFDDEVD SIRLFDKDSQ RTIEKISEAE ISPVTELIYS KDDYDKVIKN
INREIMSLDN DSKEINRQKL IDKYKQITAF IEESMFVSNI DLVNPYRKDD YSSFLDYIPK
SGLIFFDDVA RVIEDYDNFY ENFFEDLSLQ MENNEVFKSF EHARILIDDI YEQIDKFRII
NLTSILKKSK LFNPRKIIEI KTIESENFNR RVDYFIDRTI ELANSDKKVL ILEGNEKTAF
QLIDAYLEKD FTQVSKVGIG ESFEKIPIQI ANATSSSGYY IYDLDFYVFT HKEIYGSERK
ARKKKSKNKT SSRDIINYSD LDIGDYVVHE NNGIGIYKGL EKIEVNNIEK DFIVIEYRGT
DKLFVPVDQM NLISKYIGSR GESPKLSSLG TQTWQKAKAR AKKAVDEIAD DLVELYAKRS
KIKGHAFSKD TTWQNEFENS FPYEETYSQI RSIEEIKNDM ESDKPMDRLL CGDVGFGKTE
VAIRAAFKAI MDGYQVAFLV PTTILANQHY ETIKRRFDKF PVNVQVISRF NPGSKNKLII
KDLKAGKVDL IIGTHRLLSK DVGYKNLGLL IIDEEQRFGV KHKEKLKELK SSLDVLTLSA
TPIPRTLQMS LSGIRDLSTL DEAPEERMPV NTYVLEYDNG IIKQAIEREL NRNGQVYFVY
NRVNDIEKLY NHLIELVPDA NIAIIHGRIS PKQIEKTMLE FIDGEIDILL STTIIETGMD
ISNVNTIIIY DSDMMGLGQL YQLKGRIGRG NRSSYAYFTY RTGKILSEIS EKRLKSIRDF
SDFGSGYKIA MKDLELRGAG NLLGESQSGH VEAIGYDLYV KFLQEAVEKA SGKEVEIKDK
SDVYIDIKVD GYIPNFYIED QAQKIEIYNR IARIQNQEDY DELVADLIDV YGDIPIMVDN
LMYISLIKSM ADELLFSEIR EKSGNVNIYF ENKDAFSFEE LAEINQSFER DMSLDLSTNP
AFKIPVSRNK LLDTYELLKT IEKVRSKNEK
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