| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1104 |
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| Symbol | |
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| ID | 8413977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1246780 |
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| End bp | 1249518 |
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| Gene Length | 2739 bp |
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| Protein Length | 912 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 645022693 |
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| Product | DNA polymerase I |
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| Protein accession | YP_003180123 |
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| Protein GI | 257784906 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGATA CTACTATGCC AGTTAATACT GCAGATCAAA ACAACGCCAC ATCAGCCAAA
GAAGCCGCAG TTAAACCACG TAGAACTATT GCCGTTATTG ACGGAAACTC GCTTATGCAT
CGAGCATTTC ATGCAATTCG TCAGCCTATG GCGGCCCCAG ATGGAACGCC AACTGGTGCG
TTGTTTGGCT TCTTTAACAT GTTTATCAAG CTTGTTGAGT CCTTCTCGCC AGATGGTGTC
ATTTGTGCGT TTGATAAGGG CAAACCTCAG ATTCGTATTG ATATGTTGCC TCAGTACAAA
GCTCAGCGTC CTCCTATGGA TCCTGCTTTA CACGCACAGT TTCCTGTAGT CAAAGAGCTG
CTCAAGACGC TGGATGTTCC CGTCTGTCAG CTTGAAGGCT GGGAGGGTGA CGATATTTTA
GGTACCCTTG CTCGTCGTGG AGAGGCAGAG GGTTACCAGA TGCTGCTCTT TACAGGCGAC
CGTGATATGT ACCAGCTCTC CACAGAAAAC GTCAAGATTG TCTCTACGCG CAAGGGTGTT
TCCGATGTCT CAATTATGAC TCCAGAGACC GTAGCTGACC TTTATGCAGG TATTACGCCA
GAGCTTGTCC CAGATTTCTA TGGACTTAAG GGAGATTCTT CCGACAACAT TCCTGGTGTT
CCGGGAATTG GCCCCAAGAA AGCTGCTGCT CTCATTGTGG AGTATGGTTC GCTTGATGAG
GTTATTGCTC ATGCCGATGA GGTTAAGGGC AAGGTGGGAG AAAACCTTCG CGCCCACATT
GATGACGCGC TACTCTCCCG CAAGGTTGCT ACTATTCGTA CCGATGCACC GCTTGATATC
AACCTGGATG ACGCTAAGTT CCCAACATTT GATCCAAATG ACGTGGTCAA GGCATTTTCG
GCCTTGGGCT TTACAGGCAT GACCTCAAGG CTTGCTCGTA TGGCTGGTGG TTCTGCTTCT
GGTGTAACCG CACAAACTGC TTCTGCTACG CCTGCGCTTC CTATTCCGTC AGAATTTCTG
CAGGCAGGAG ACGCGTCTGC TGCTTTGACC GCTGCTCTTG AGAATCAGGA GTGGATTGGT
GTTGCAGAGG ATTCTGCCGC CGACACTGGC GCACTCTTTA GTCTTTCTCA CACACTTTGG
GTGTCTACAG AAAAGGCGCT TCTCAAATTT GAGGGAGAAA ACGCAACCGC GGCGCTGTTG
CGTATTTTGC GAGAAGCTCG TGTTGCTGCA GACGATGTCA AGGCACTGCT TCATGAGGTA
AGCCCTGTTG ATTCATCCGA GCCACAGAAA CTGGATATTG AGACCATTGA TTCTGACCGC
CTCTTTGATA CGGGCGTTGC TGCGTATCTG CTTGAGTCTG ATCGTTCAAG TTTTGATATC
AACGGCCTGG TTGAGTTGTA TTTTGGCTCT GAGCTTCCTG AGCCTACAGA TGAGATTCCT
GCCGCAGCAT TAAGAGCTGT AGCTGCTAGG GCTCTTGTGC CTGTGCTCAC TAAAAAGCTT
GAAGATGATG GTTCCCTGGA GCTCTTTACT TCTCTAGAGA TGCAACTTTT GCCTGTACTT
GCTGCGATGG AGCGTCGCGG TCTCTACGTT GATCCTCAAA AGCTTGCCGA ACAGTCCGCT
CAGCTTGGTG AAGACATTGC GCAACGAGTG GCAAGTATTC ACCAGACAGC AGGCGAGGAT
TTCAACTTGG ATTCTCCAAG TCAGCTTTCT CATATCTTGT TTGACGTGCT CAAGCTTCCA
ACTTATGGTC TCAAAAAGAC TCGTACTGGC TTCTATTCCA CCAACGCAAA AGTTCTTGGA
GAGCTGGCAC AGGAGTATCA GATTGTTGCT GATGTTCTTG AGTATCGCGA ACGCGCCAAA
ATCAAATCTA CCTATCTAGA TGCTCTTCCT TCACTTATTC GTGGTGATAA GCGTATCCAT
ACCACGCTCA ATCAGACCGT TACTGCAACG GGCAGGCTTT CTAGCTCTGA TCCAAACTTG
CAGAACATTC CTACTCGTTC TGAGCTGGGA CATCGTGTTC GCACCGCATT CACTGTTCCC
GAGGGCAGCG TTTTTCTCGC CTGTGACTAC TCTCAGATTG AGCTTCGCCT GCTCGCTCAT
CTTTCTGCTG ATGAGCACCT AGTAGCAGCA TTCAACTCTG GCGCTGACTT CCATGCAGCA
ACTGCCGCAC GTGTCTTTGG CGTTCCTGTT GAAGAGGTAA CCCCAGCACT TCGTAGTCGT
GCTAAGGCAG TCAACTTTGG CATTGTCTAT GGTCAGCAGG CCTTTGGTCT GGCAACGTCT
CTTAAGATTT CTCGCAAGGA AGCGCAAGAG ATGATTGACC GTTATTTTGA TGCCTATCCT
GGTGTTCGTG CGTATTTAGA TGACTCCGTC CGCACGGCTC ACGAGTGTGG TTACGCTATT
ACCATGTATG GTCGTAAGCG TCACATTAGA GAGTTTAACC AATCAAATCG CCAGCTTATT
GCCTTTGGCG AGCGCACCGC CATGAATCAT CCTATGCAGG GAAGTGCTGC AGATATTATC
AAGATTGCAA TGATTAATGT CGAGAAACGC TTGCGTGATG AAGGTCTTAC GTCAAAACTG
ATTCTTCAGA TCCACGACGA ACTTGACTTG GAAGTTCCAG AGTCAGAGAT TGAGACAGTT
TCTACGCTGG TAAAAGAGAC TATGGAAGAC GTTGTTACCC TGCGTGTTCC TTTGATTGCT
GATGTCAGCT ATGGTTCCAA TTGGGCAGAG GCAAAGTAA
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| Protein sequence | MSDTTMPVNT ADQNNATSAK EAAVKPRRTI AVIDGNSLMH RAFHAIRQPM AAPDGTPTGA
LFGFFNMFIK LVESFSPDGV ICAFDKGKPQ IRIDMLPQYK AQRPPMDPAL HAQFPVVKEL
LKTLDVPVCQ LEGWEGDDIL GTLARRGEAE GYQMLLFTGD RDMYQLSTEN VKIVSTRKGV
SDVSIMTPET VADLYAGITP ELVPDFYGLK GDSSDNIPGV PGIGPKKAAA LIVEYGSLDE
VIAHADEVKG KVGENLRAHI DDALLSRKVA TIRTDAPLDI NLDDAKFPTF DPNDVVKAFS
ALGFTGMTSR LARMAGGSAS GVTAQTASAT PALPIPSEFL QAGDASAALT AALENQEWIG
VAEDSAADTG ALFSLSHTLW VSTEKALLKF EGENATAALL RILREARVAA DDVKALLHEV
SPVDSSEPQK LDIETIDSDR LFDTGVAAYL LESDRSSFDI NGLVELYFGS ELPEPTDEIP
AAALRAVAAR ALVPVLTKKL EDDGSLELFT SLEMQLLPVL AAMERRGLYV DPQKLAEQSA
QLGEDIAQRV ASIHQTAGED FNLDSPSQLS HILFDVLKLP TYGLKKTRTG FYSTNAKVLG
ELAQEYQIVA DVLEYRERAK IKSTYLDALP SLIRGDKRIH TTLNQTVTAT GRLSSSDPNL
QNIPTRSELG HRVRTAFTVP EGSVFLACDY SQIELRLLAH LSADEHLVAA FNSGADFHAA
TAARVFGVPV EEVTPALRSR AKAVNFGIVY GQQAFGLATS LKISRKEAQE MIDRYFDAYP
GVRAYLDDSV RTAHECGYAI TMYGRKRHIR EFNQSNRQLI AFGERTAMNH PMQGSAADII
KIAMINVEKR LRDEGLTSKL ILQIHDELDL EVPESEIETV STLVKETMED VVTLRVPLIA
DVSYGSNWAE AK
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